Scientific Publications 2005

Journal Articles [93]

Abesamis, RA and Russ, GR (2005). “Density-dependent spillover from a marine reserve: Long-term evidence.” Ecological Applications 15(5): 1798-1812.
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Adger, WN, T.P. Hughes, C. Folke, S.R. Carpenter, and J. Rockstrom. (2005). “Social-ecological resilience to coastal disasters.” Science 309(5737): 1036-1039.
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Alcala, AC, et al. (2005). “A long-term, spatially replicated experimental test of the effect of marine reserves on local fish yields.” Canadian Journal of Fisheries and Aquatic Sciences 62(1): 98-108.
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Annese, DM and Kingsford, MJ (2005). “Distribution, movements and diet of nocturnal fishes on temperate reefs.” Environmental Biology of Fishes 72(2): 161-174.
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Anthony, KRN, et al. (2005). “Adaptive variation in coral geometry and the optimization of internal colony light climates.” Functional Ecology 19(1): 17-26.
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Baird, AH, et al. (2005). “Acehnese reefs in the wake of the Asian tsunami.” Current Biology 15(21): 1926-1930.
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Barber, PH and Bellwood, DR (2005). “Biodiversity hotspots: evolutionary origins of biodiversity in wrasses (Halichoeres : Labridae) in the Indo-Pacific and new world tropics.” Molecular Phylogenetics and Evolution 35(1): 235-253.
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Barnett, A and Bellwood, DR (2005). “Sexual dimorphism in the buccal cavity of paternal mouthbrooding cardinalfishes (Pisces : Apogonidae).” Marine Biology 148(1): 205-212.
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Barthel, S, et al. (2005). “History and local management of a biodiversity-rich, urban cultural landscape.” Ecology and Society 10(2).
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Bellwood, DR, et al. (2005). “Environmental and geometric constraints on Indo-Pacific coral reef biodiversity.” Ecology Letters 8(6): 643-651.
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Bergenius, MAJ, et al. (2005). “Environmental influences on larval duration, growth and magnitude of settlement of a coral reef fish.” Marine Biology 147(2): 291-300.
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Berumen, ML, Pratchett MS andMcCormick MI (2005). “Within-reef differences in diet and body condition of coral-feeding butterflyfishes (Chaetodontidae).” Marine Ecology-Progress Series 287: 217-227.
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Birrell, CL, et al. (2005). “Effects of algal turfs and sediment on coral settlement.” Marine Pollution Bulletin 51(1-4): 408-414.
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Browne, JG and Kingsford, MJ (2005). “A commensal relationship between the scyphozoan medusae Catostylus mosaicus and the copepod Paramacrochiron maximum.” Marine Biology 146(6): 1157-1168.
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Ceccarelli, DM, et al. (2005). “Effects of territorial damselfish on an algal-dominated coastal coral reef.” Coral Reefs 24(4): 606-620.
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Ceccarelli, DM, et al. (2005). “Foragers versus farmers: contrasting effects of two behavioural groups of herbivores on coral reefs.” Oecologia 145(3): 445-453.
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Connolly, SR (2005). “Process-based models of species distributions and the mid-domain effect.” American Naturalist 166(1): 1-11.
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Connolly, SR, et al. (2005). “Community structure of corals and reef fishes at multiple scales.” Science 309(5739): 1363-1365.
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Depczynski, M and Bellwood, DR (2005). “Shortest recorded vertebrate lifespan found in a coral reef fish.” Current Biology 15(8): R288-R289.
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Depczynski, M and Bellwood, DR (2005). “Wave energy and spatial variability in community structure of small cryptic coral reef fishes.” Marine Ecology-Progress Series 303: 283-293.
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Diaz-Pulido, G and McCook, LJ (2005). “Effects of nutrient enhancement on the fecundity of a coral reef macroalga.” Journal of Experimental Marine Biology and Ecology 317(1): 13-24.
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Donner, SD, et al. (2005). “Global assessment of coral bleaching and required rates of adaptation under climate change.” Global Change Biology 11(12): 2251-2265.
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Edmunds, PJ, et al. (2005). “The effect of temperature on the size and population density of dinoflagellates in larvae of the reef coral Porites astreoides.” Invertebrate Biology 124(3): 185-193.
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Fabricius, K, et al. (2005). “Changes in algal, coral and fish assemblages along water quality gradients on the inshore Great Barrier Reef.” Marine Pollution Bulletin 51(1-4): 384-398.
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Fallon, SJ, et al. (2005). “Interpreting environmental signals from the coralline sponge Astrosclera willeyana.” Palaeogeography Palaeoclimatology Palaeoecology 228(1-2): 58-69.
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Fine, M, et al. (2005). “Tolerance of endolithic algae to elevated temperature and light in the coral Montipora monasteriata from the southern Great Barrier Reef.” Journal of Experimental Biology 208(1): 75-81.
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Folke, C, et al. (2005). “Adaptive governance of social-ecological systems.” Annual Review of Environment and Resources 30: 441-473.
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Fulton, CJ and Bellwood, DR (2005). “Wave-induced water motion and the functional implications for coral reef fish assemblages.” Limnology and Oceanography 50(1): 255-264.
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Fulton, CJ, et al. (2005). “Wave energy and swimming performance shape coral reef fish assemblages.” Proceedings of the Royal Society B-Biological Sciences 272(1565): 827-832.
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Gardiner, NM and Jones, GP (2005). “Habitat specialisation and overlap in a guild of coral reef cardinalfishes (Apogonidae).” Marine Ecology-Progress Series 305: 163-175.
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Green, BS and McCormick, MI (2005). “Maternal and paternal effects determine size, growth and performance in larvae of a tropical reef fish.” Marine Ecology-Progress Series 289: 263-272.
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Green, BS and McCormick, MI (2005). “O-2 replenishment to fish nests: males adjust brood care to ambient conditions and brood development.” Behavioral Ecology 16(2): 389-397.
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Greenstein, BJ, et al. (2005). “A fossil reef from the last interglacial, Western Australia.” Coral Reefs 24(4): 593-593.
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Guest, JR, et al. (2005). “Reproductive seasonality in an equatorial assemblage of scleractinian corals.” Coral Reefs 24(1): 112-116.
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Guest, JR, et al. (2005). “Seasonal reproduction in equatorial reef corals.” Invert. Reprod. & Develop. 48: 207-218.

Gunderson, L and Folke, C (2005). “Resilience – Now more than ever.” Ecology and Society 10(2).
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Gunderson, L, et al. (2005). “Integrating ecology and society to navigate turbulence.” Ecology and Society 10(1).
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Hernaman, V and Munday, PL (2005). “Life-history characteristics of coral reef gobies. I. Growth and life-span.” Marine Ecology-Progress Series 290: 207-221.
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Hernaman, V and Munday, PL (2005). “Life-history characteristics of coral reef gobies. II. Mortality rate, mating system and timing of maturation.” Marine Ecology-Progress Series 290: 223-237.
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Hislop, NR, et al. (2005). “Tandem organization of independently duplicated homeobox genes in the basal cnidarian Acropora millepora.” Development Genes and Evolution 215(5): 268-273.
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Hixon, MA and Jones, GP (2005). “Competition, predation, and density-dependent mortality in demersal marine fishes.” Ecology 86(11): 2847-2859.
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Hoegh-Guldberg, O (2005). “Low coral cover in a high-CO2 world.” Journal of Geophysical Research-Oceans 110(C9).
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Hoegh-Guldberg, O, et al. (2005). “Coral bleaching following wintry weather.” Limnology and Oceanography 50(1): 265-271.
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Hoey, AS and McCormick, MI. Effects of subcataneous fluorescent tags on the growth and survival of a newly settled coral reef fish, Pomacentrus amboinensis (Pomacentridae) in Proceedings of the 10th International Coral Reef Symposium. 2005. Okinawa, Japan: ICRS.

Hughes, TP, D.R. Bellwood, C. Folke, R.S. Steneck, and J. Wilson (2005). “New paradigms for supporting the resilience of marine ecosystems.” Trends in Ecology & Evolution 20(7): 380-386.
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Hutchings, P, et al. (2005). “Catchment to Reef: Water quality issues in the Great Barrier Reef Region – An overview of papers.” Marine Pollution Bulletin 51(1-4): 3-8.
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Jones, GP, et al. (2005). “Coral reef fish larvae settle close to home.” Current Biology 15(14): 1314-1318.
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Kingsford, MJ and Hughes, JM (2005). “Patterns of growth, mortality, and size of the tropical damselfish Acanthochromis polyacanthus across the continental shelf of the Great Barrier Reef.” Fishery Bulletin 103(4): 561-573.
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Kleypas, JA, et al. (2005). “Comment on “Coral reef calcification and climate change: The effect of ocean warming”.” Geophysical Research Letters 32(8).
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Konow, N and Bellwood, DR (2005). “Prey-capture in Pomacanthus semicirculatus (Teleostei, Pomacanthidae): functional implications of intramandibular joints in marine angelfishes.” Journal of Experimental Biology 208(8): 1421-1433.
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Kroon, FJ, Munday, P.L., Westcott, D.A., Hobbs, J-P.A., and Liley N.R. (2005). “Aromatase pathway mediates sex change in each direction.” Proceedings of the Royal Society B-Biological Sciences 272(1570): 1399-1405.
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Larson, JK and McCormick, MI (2005). “The role of chemical alarm signals in facilitating learned recognition of novel chemical cues in a coral reef fish.” Animal Behaviour 69: 51-57.
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Lecchini, D, et al. (2005). “Experimental assessment of sensory modalities of coral-reef fish larvae in the recognition of their settlement habitat.” Behavioral Ecology and Sociobiology 58(1): 18-26.
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Leggat, W., Dixon, R., Saleh, S. and Yellowlees, D. (2005). “A novel carbonic anhydrase from the giant clam Tridacna gigas contains two carbonic anhydrase domains.” Febs Journal 272(13): 3297-3305.
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Lo-Yat, A, et al. (2005). “Small-scale spatial variation in the elemental composition of otoliths of Stegastes nigricans (Pomacentridae) in French Polynesia.” Coral Reefs 24(4): 646-653.
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Lou, DC, et al. (2005). “Using otolith weight-age relationships to predict age-based metrics of coral reef fish populations at different spatial scales.” Fisheries Research 71(3): 279-294.
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Marinaro, JY, et al. (2005). “First record of effective reproduction of the dusky grouper, Epinephelus marginatus (Lowe, 1834), in the Cerbere-Banyuls (France) marine protected area.” Cybium 29(2): 198-200.

Marquis, CP, et al. (2005). “An evaluation of the antimicrobial properties of the eggs of 11 species of scleractinian corals.” Coral Reefs 24(2): 248-253.
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McClanahan, TR, et al. (2005). “Interaction between inorganic nutrients and organic matter in controlling coral reef communities in Glovers Reef Belize.” Marine Pollution Bulletin 50(5): 566-575.
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McCormick, MI and Hoey, AS. Biological and physical correlates of settlement and survival for a coral reef fish, Pomacentrus amboinensis (Pomacentridae). in Proceedings of the 10th International Coral Reef Symposium. 2005. Okinawa, Japan: ICRS.

McCulloch, M, et al. (2005). “Tracing the life history of individual barramundi using laser ablation MC-ICP-MS Sr-isotopic and Sr/Ba ratios in otoliths.” Marine and Freshwater Research 56(5): 637-644.
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Messmer, V, et al. (2005). “Genetic and ecological characterisation of colour dimorphism in a coral reef fish.” Environmental Biology of Fishes 74(2): 175-183.
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Messmer, V, et al. (2005). “Phylogeography of colour polymorphism in the coral reef fish Pseudochromis fuscus, from Papua New Guinea and the Great Barrier Reef.” Coral Reefs 24(3): 392-402.
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Miller-Sims, V, et al. (2005). “DNA microsatellites in Acanthochromis polyacanthus.” Molecular Ecology Notes 5(4): 841-843.
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Miller-Sims, V, et al. (2005). “DNA microsatellites in the neon damselfish (Pomacentrus coelestis).” Molecular Ecology Notes 5(2): 424-426.
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Miller, DJ and Ball, EE (2005). “Animal evolution: The enigmatic phylum placozoa revisited.” Current Biology 15(1): R26-R28.
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Miller, DJ, et al. (2005). “Cnidarians and ancestral genetic complexity in the animal kingdom.” Trends in Genetics 21(10): 536-539.
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Miller, DJ, et al. (2005). “Reconstitution of the peridinin-chlorophyll a protein (PCP): Evidence for functional flexibility in chlorophyll binding.” Photosynthesis Research 86(1-2): 229-240.
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Moland, E, et al. (2005). Ecology and evolution of mimicry in coral reef fishes. Oceanography and Marine Biology – an Annual Review, Vol. 43. Boca Raton, CRC PRESS-TAYLOR & FRANCIS GROUP. 43: 455-482.

Montagno, P, et al. (2005). High- resolution trace and minor element compositions in deep-water scleractinian corals (Desmophyllum dianthus) from the Mediterranean Sea and the Great Australian Bight. Cold-water Corals and Ecosystems. A. Freiwald and J. M. Roberts. Berlin Heidelberg, Springer-Verlag: 1109-1126.

Pandolfi, JM (2005). “Are U.S. coral reefs on the slippery slope to slime? (vol 307, pg 1725, 2005).” Science 308(5729): 1742-1743.
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Pandolfi, JM, et al. (2005). “Ecology – Are US coral reefs on the slippery slope to slime?” Science 307(5716): 1725-1726.
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Patterson, HM and Kingsford, MJ (2005). “Elemental signatures of Acanthochromis polyacanthus otoliths from the Great Barrier Reef have significant temporal, spatial, and between-brood variation.” Coral Reefs 24(3): 360-369.
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Patterson, HM, et al. (2005). “Resolution of the early life history of a reef fish using otolith chemistry.” Coral Reefs 24(2): 222-229.
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Pelejero, C, et al. (2005). “Preindustrial to modern interdecadal variability in coral reef pH.” Science 309(5744): 2204-2207.
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Pillay, RM, et al. (2005). “Trends in the density of zooxanthellae in Acropora millepora (Ehrenberg, 1834) at the Palm Island Group, Great Barrier Reef, Australia.” Symbiosis 38(3): 209-226.

Planes, S, et al. (2005). “Stability of coral reef fish assemblages impacted by nuclear tests.” Ecology 86(10): 2578-2585.
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Pratchett, MS (2005). “Dietary overlap among coral-feeding butterflyfishes (Chaetodontidae) at Lizard Island, northern Great Barrier Reef.” Marine Biology 148(2): 373-382.
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Pratchett, MS (2005). “Dynamics of an outbreak population of Acanthaster planci at Lizard Island, northern Great Barrier Reef (1995-1999).” Coral Reefs 24(3): 453-462.
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Raven, J, et al. (2005). “Ocean Acidification due to increasing atmospheric carbon dioxide.” Royal Society Special Report: 68.

Roark, EB, et al. (2005). “Radiocarbon-based ages and growth rates of bamboo corals from the Gulf of Alaska.” Geophysical Research Letters 32(4).
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Russ, GR, et al. (2005). “Inferring versus measuring rates of recovery in no-take marine reserves.” Marine Ecology-Progress Series 292: 1-12.
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Sale, PF, et al. (2005). “Critical science gaps impede use of no-take fishery reserves.” Trends in Ecology & Evolution 20(2): 74-80.
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Simpson, SD, et al. (2005). “Homeward Sound.” Science 308(5719): 221-.
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Simpson, SD, et al. (2005). “Response of embryonic coral reef fishes (Pomacentridae : Amphiprion spp.) to noise.” Marine Ecology-Progress Series 287: 201-208.
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Technau, U, et al. (2005). “Maintenance of ancestral complexity and non-metazoan genes in two basal cnidarians.” Trends in Genetics 21(12): 633-639.
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Van Oppen, MJH, et al. (2005). “Geographic distribution of zooxanthella types in three coral species on the Great Barrier Reef sampled after the 2002 bleaching event.” Coral Reefs 24(3): 482-487.
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Van Oppen, MJH, et al. (2005). “Diversity of algal endosymbionts (zooxanthellae) in octocorals: the roles of geography and host relationships.” Molecular Ecology 14(8): 2403-2417.
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Van Oppen, MJH, et al. Nuclear markers in evolutionary and population genetic studies of scleractinian corals and sponges. in Proceedings of the 10th International Coral Reef Symposium. 2005. Okinawa, Japan: ICRS.

Westneat, MW, et al. (2005). “Local phylogenetic divergence and global evolutionary convergence of skull function in reef fishes of the family Labridae.” Proceedings of the Royal Society B-Biological Sciences 272(1567): 993-1000.
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Wittenrich, ML and Munday, PL (2005). “Labile sex allocation in three species of Pseudochromis (Pseudochromidae): an experimental evaluation.” Zoological Science 22: 797-803.

Wong, MYL, et al. (2005). “Habitat patch size, facultative monogamy and sex change in a coral-dwelling fish, Caracanthus unipinna.” Environmental Biology of Fishes 74(2): 141-150.
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Yakovleva, IM and Baird, AH (2005). “Ontogenetic change in the abundance of mycosporine-like amino acids in non-zooxanthellate coral larvae.” Coral Reefs 24(3): 443-452.
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