Scientific Publications 2000-2004

Journal Articles

Abram , N.J., Gagan, M.K., McCulloch, M.T., Chappell, J. and Hantoro, W.S. (2003) Coral reef death during the 1997 Indian Ocean dipole linked to Indonesian wildfires. Science, 301 (5635): 952-955.
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Alibert, C., Kinsley, L., Fallon, S., McCulloch, M.T. Berkelmans, R., and McAllister, F. (2003) Source of trace element variability in Great Barrier Reef corals affected by the Burdekin flood plumes. Geochimica et Cosmochimica Acta, 67, 2: 231-246
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Altherr R., Meyer H.P., Holl A., Volker F., Alibert C., McCulloch, M.T., Majer V.(2004) Geochemical and Sr-Nd-Pb isotopic characteristics of late Cenozoic leucite lamproites from the East European Alpine belt ( Macedonia and Yugoslavia). Contrib Mineral Petrol., 147: 58-73.
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Anthony KRN and Connolly SR (2004) Environmental limits to growth: physiological niche boundaries of corals along turbidity-light gradients. Oecologia 141:373-384.
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Anthony KRN and Hoegh-Guldberg O (2003) Variation in coral photosynthesis, respiration and growth characteristics in contrasting light microhabitats: an analogue to plants in forest gaps and understoreys? Functional Ecology 17:246-259.
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Anthony KRN, Connolly SR and Willis BL (2002) Comparative analysis of energy allocation to tissue and skeletal growth in corals. Limnol. and Ocean. 47(5):1417-1429.
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Atema, J. Kingsford, M.J. Gerlach, G. (2002) Larval reef fish could use odour for detection of lagoonal waters. Mar. Ecol. Prog. Series. 241: 151-160
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Ayliffe, L.K., Bird, M.I., Gagan, M.K., Isdale, P.J., Scott-Gagan, H., Parker, B., Griffin, D., Nongkas, M. and McCulloch, M.T. (2004) (in press). Geochemistry of coral from Papua New Guinea as a proxy for ENSO ocean-atmosphere interactions in the Pacific Warm Pool. Continental Shelf Research. 19: 2343-2356.
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Ayre DJ and Hughes TP (2000) Genotypic diversity and gene flow in brooding and spawning corals along the Great Barrier Reef, Australia. Evolution 54(5):1590-1605.
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Ayre DJ and Hughes TP (2004) Climate change, genotypic diversity and gene flow in reef-building corals. Ecology Letters 7:273-278.

Babcock RC, Baird AH, Piromvaragorn S, Thomson D, Willis BL (2003) The identification of scleractinian coral recruits from Indo-Pacific reefs. Zoological Studies 42:211-226.
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Baird AH and Hughes TP (2000) Competitive dominance by tabular corals: an experimental analysis of recruitment and survival of understorey assemblages. J. of Exp. Mar. Bio. and Ecol. 251:117-132.
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Baird AH and Marshall PA (2002) Growth and reproduction in scleractinian corals following bleaching on the Great Barrier Reef. Mar. Ecol. Prog. Ser. 237:133-141.
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Baird AH and Morse ANC (2004) Induction of metamorphosis in larvae of the brooding corals Acropora palifera and Stylophora pistilla.Marine and Freshwater Res. 55:469-472.
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Baird AH, Babcock RC, and Mundy CP (2003) Habitat selection by larvae influences the depth distribution of six common coral species. Mar. Ecol. Prog. Ser. 252:289-293.
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Ball EE, Hayward DC, Reece-Hoyes JS, Hislop NR, Samuel G, Saint R, Harrison PL and Miller DJ (2002) Coral development: from classical embryology to molecular control. Intern. J. Developmental Bio. 46:671-678.
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Ball EE, Hayward DC, Saint R and Miller DJ (2004) A simple plan – cnidarians and the origins of developmental mechanisms. Nature Reviews: Genetics 5:567-577.
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Bay LK, Jones GP and McCormick MI (2001) Habitat selection and aggression as determinants of spatial segregation among damselfish on a coral reef. Coral Reefs 20:289-300.
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Bean K, Jones GP and Caley MJ (2002) Relationships among distribution, abundance and habitat specialisation in a guild of coral reef triggerfish (family Balistidae). Mar. Ecol. Prog. Ser. 233:263-279.
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Beddoe T, Ling M, Dove S, Hoegh-Guldberg O, Devenish R J, Prescott M and Rossjohn J (2003) The production, purification and crystallization of a pocilloporin pigment from a reef-forming coral. Acta Cryst. (2003). D 59, 597-599.
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Beger M, Jones JP and Munday PL (2003) Selecting sites for coral reef protected areas: a comparison of biodiversity approaches for corals and fish. Biol. Conserv. 111: 53-62.
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Bellwood DR (2003) Origins and escalation of herbivory in fishes: a functional perspective. Paleobiology 29(1):71-83.
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Bellwood DR and Hughes TP (2001) Regional-scale assembly rules and biodiversity of coral reefs. Science 292:1532-1534.
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Bellwood DR , Hoey A and Choat JH (2003) Limited functional redundancy in high diversity systems: resilience and ecosystem function on coral reefs. Ecology Letters 6:281-285.
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Bellwood DR , Hughes TP, Folke C, and Nyström M (2004) Confronting the coral reef crisis. Nature 429:827-833.
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Bellwood DR , van Herwerden L and Konow N (2004) Evolution and biogeography of marine angelfishes (Pisces: Pomacanthidae). Mol. Phylogenetics and Evol. 33:140-155.
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Bellwood DR , Wainwright PC, Fulton CJ and Hoey A (2002) Assembly rules and functional groups at global biogeographic scales. Functional Ecology 16: 557-562.
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Bergenius MAJ, Meekan MG, Robertson DR, McCormick MI (2002) Larval growth predicts the recruitment success of a coral reef fish. Oecologia 131:521-525.
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Beukers-Stewart BD and Jones GP (2004) The influence of prey abundance on the feeding ecology of two piscivorous species of coral reef fish. J. of Exp. Mar. Bio. and Ecol. 299:153-182.
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Booth, D.J., Kingsford, M.J., Doherty, P.J., Berretta, G.A. (2001). Recruitment of damselfishes in One Tree Island lagoon: persistent interannual spatial patterns. Mar. Ecol. Prog. Ser. 212-230.
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Bradbury R (2002) Futures, predictions and other foolishness. In: Complexity and Ecosystem Management: The Theory and Practice of Multi-agent Systems (Janssen MA, ed) pp 48-62 Cheltenham, Edward Elgar.

Bradbury R (2003) Deep complexity: now comes the scary bit. CSIRO Complex Systems Science Symposium, Sydney 27-29 August. © Roger Bradbury 2003.
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Bryant, C. J., Chappell, B. W., Bennett, V. C., and McCulloch, M.T, (2005) Lithium isotopic compositions of the New England Batholith: correlations with inferred source rock compositions. Transactions: Earth Sciences, 95(1-2):p.199-214
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Bryant, C.J., McCulloch, M.T. and Bennett V.C. (2003) Impact of matrix effects on the accurate measurement of Li isotope ratios by inductively coupled plasma mass spectrometry (MC-ICP-MS) under cool plasma conditions. J. Anal. Atomic Spectrom. 18: 734-737.
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Budd AF and Pandolfi JM (2004) Overlapping species boundaries and hybridization within the Montastraeaannularis” reef coral complex in the Pleistocene of the Bahama Islands. Paleobiology 30(3):396-425.
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Buston PM, Munday PL and Warner RR (2004) Sex change and relative body size in animals. Nature 428:1.
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Caley MJ, Buckley K and Jones GP (2001) Separating the effects of habitat fragmentation, degradation and loss on coral commensals. Ecology 82:3435-3448.
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Ceccarelli DM., Jones GP and McCook LJ (2001) Territorial damselfish as determinants of benthic community structure on coral reefs. Oceanography and Marine Biology: an Annual Review 39:355-389.
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Connell JH, Hughes TP, Wallace CC, Tanner JE, Harms KE and Kerr AM (2004) A long-term study of competition and diversity of corals. Ecological Monographs 74(2):179-210.
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Connolly SR and Miller AI (2001a) Joint estimation of sampling and turnover rates from fossil databases: capture-mark-recapture methods revisited. Paleobiology 27(4):751-767.
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Connolly SR and Miller AI (2001b) Global Ordovician faunal transitions in the marine benthos: proximate causes. Paleobiology 27(4)779-795.
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Connolly SR and Miller AI (2002) Global Ordovician faunal transitions in the marine benthos: ultimate causes. Paleobiology 28(1):26-40.
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Connolly SR and Muko S (2003) Space preemption, size-dependent competition, and the coexistence of clonal growth forms. Ecology 84(11):2979-2988.
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Connolly SR, Bellwood DR and Hughes TP (2003) Indo-Pacific biodiversity of coral reefs: deviations from a mid-domain model. Ecology 84(8):2178-2190.
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Connolly SR, Menge BA and Roughgarden J (2001) a latidudinal gradient in recruitment of intertidal invertebrates in the northeast Pacific Ocean. Ecology 82(7):1799-1813.
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Corrège T, Gagan MK, Beck JW, Burr GS, Cabioch G and Le Cornec F (2004) Interdecadal variation in the extent of South Pacific tropical waters during the Younger Dryas event. Nature 428:927-929.
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Curley B, Kingsford M, Gillanders B (2002) Spatial and habitat related patterns of abundance of temperate reef fishes on the central coast of New South Wales: implications for the design of marine protected areas. Marine and Freshwater Research. 53: 1197-1210.
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Dempster T, Kingsford, M.J. (2003) Homing of pelagic fishes to fish aggregation devices (FADs):the role of sensory cues .Mar. Ecol. Prog. Ser. 258: 213-222
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Dempster T, Kingsford, M.J. (2004) Drift objects as pre-settlement habitat for pelagic juvenile fish off New South Wales, AustraliaMar.FW Res. 55:675-687.
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Dempster T, Sanchez-Jerez, P., Bayle-Sempere, J., Kingsford, M.J. (2004). Extensive aggregation of wild fish at coastal sea-cage fish farms. Hydrobiologia 525: 245-248.
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Desmarchelier, J.M., Goede, A., Ayliffe, L.K., McCulloch, M.T. and Moriarty, K. (2000) Stable isotope record and its palaeoenvironmental interpretation for a late Middle Pleistocene speleothem from Victoria Fossil Cave, Naracoorte, South Australia. Quaternary Science Reviews, 19: 763-774.
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Diaz-Pulido G and McCook LJ (2002) The fate of bleached corals: patterns and dynamics of algal recruitment. Mar. Ecol. Prog. Ser. 232:115-128.
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Diaz-Pulido G and McCook LJ (2003) Relative roles of herbivory and nutrients in the recruitment of coral-reef seaweeds. Ecology 84(8):2026-2033.
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Diaz-Pulido G and McCook LJ (2004) Effects of live coral, epilithic algal communities and substrate type on algal recruitment. Coral Reefs 23:225-233.
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DiMichele WA, Behrensmeyer AK, Olszewski TD, Labandeira CC, Pandolfi JM, Wing SL and Bobe R (2004) Long-term stasis in ecological assemblages: evidence from the fossil record. Ann. Rev. of Ecology, Evolution, and Systematics 35:285-322.
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Dorfman, E.J., Kingsford, M.J. (2001). Distribution and behaviour of cormorants (Phalocrocoranx spp) in estuarine habitats of temperate of eastern-Australia. Mar. Biol. 138: 1-10
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Dove SG, Hoegh-Guldberg O and Ranganathan S (2001) Major colour patterns of reef-building corals are due to a family of GFP-like proteins. Coral Reefs 19:197-204.
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Eagle JV and Jones GP (2004) Mimicry in coral reef fishes: ecological and behavioural responses of a mimic to its model. J. of Zoology 264:33-43.
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Eagle JV, Jones GP and McCormick MI (2001) Relationships between habitat use and the distribution and abundance patterns of co-existing coral reef angelfishes (Pomacanthidae). Mar. Ecol. Prog. Ser. 214:253-265.
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Edinger E N, Pandolfi JM and Kelley R (2001) Community structure of Quaternary coral reefs compared with Recent life and death assemblages. Paleobiology 27:669-694.
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Emslie MJ and Jones GP (2001) Patterns of embryo mortality in a demersal spawning coral reef fish and the role of predatory fishes. Environ. Bio. of Fishes 60:363-373.
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Fabricius KE, Mieog JC, Colin PL, Idip D and van Oppen MJH (2004) Identity and diversity of coral endosymbionts (zooxanthellae) from three Palauan reefs with contrasting bleaching, temperature and shading histories. Mol. Ecol. 13:2445-2458.
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Fallon, S., McCulloch, T. M. and Alibert, C. (2003) Examining water temperature proxies in Porites corals from the Great Barrier Reef: a cross-shelf comparison. Coral Reefs. 22: 389-404
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Fallon, S.J., White, J.C. and McCulloch, M.T. (2002) Porites corals as recorders of mining and environmental impacts: Misima Island, Papua New Guinea. Geochemica et Cosmochimica Acta, 66, 1, 45-62.
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Ferrier-Pagès C, Schoelzke V, Jaubert J, Muscatine L and Hoegh-Guldberg O (2001) Response of a scleractinian coral, Stylophora  pistillata, to iron and nitrate enrichment.  J. of Exp. Mar. Biol. and Ecol. 259(2):249-261.
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Fine M and Loya Y (2002) Endolithic algae: an alternative source of photoassimilates during coral bleaching. Proc. of the Royal Society of Lond. 269:1205-1210.
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Fine M and Loya Y (2003) Alternate coral-bryozoan competitive superiority during coral bleaching. Marine Biology 142:989-996.
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Fine M, Banin E, Israely T, Rosenberg E and Loya Y (2002) Ultraviolet radiation prevents bleaching in the Mediterranean coral Oculina patagonica. Mar. Ecol. Prog. Ser. 226:249-254.
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Fine M, Oren U and Loya Y (2002) Bleaching effect on regeneration and resource translocation in the coral Oculina patagonica. Mar. Ecol. Prog. Ser. 234:119-125.
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Fine M, Steindler L and Loya Y (2004) Endolithic algae photoaccilimate to increased irradiance during coral bleaching. Marine and Freshwater Res. 55:115-121.
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Fine M, Zibrowius H and Loya Y (2001) Oculina patagonica: a non-lessepsian scleractinian coral invading the Mediterranean Sea. Marine Biology 138:1195-1203.
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Franklin DJ, Hoegh-Guldberg O, Jones RJ and Berges JA (2004) Cell death and degeneration in the symbiotic dinoflagellates of the coral Stylophora pistillata during bleaching. Mar. Ecol. Prog. Ser. 272:117-130.
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Gagliano M and McCormick MI (2004) Feeding history influences otolith shape in tropical fish. Mar. Ecol. Prog. Ser. 278:291-296.
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Gillanders BM, Kingsford MJ (2000) Elemental fingerprints of otoliths may distinguish estuarine ‘nursery’ habitats. Marine Ecology Progress Series 201:273-286
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Gillanders, B.M and Kingsford M.J. (2003). Spatial variation in elemental composition of otoliths of three species of fish (family Sparidae). Estuarine and Coastal Marine Science 57: 1049-1064
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Graham NAJ, Evans RD and Russ GR (2003) The effects of marine reserve protection on the trophic relationships of reef fishes on the Great Barrier Reef. Environ. Conserv. 30(2):200-208.
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Gray CA, Kingsford MJ (2003) Variability in thermocline depth and strength relationships with vertical distributions of fish larvae and mesozooplankton in dynamic coastal waters. Marine Ecology Progress Series 247:211-224
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Grumet NS, Abram NJ, Beck JW, Dunbar RB, Gagan MK, Guilderson TP, Hantoro WS and Suwargadi BW (2004) Coral radiocarbon records of Indian Ocean water mass mixing and wind-induced upwelling along the coast of Sumatra, Indonesia. J. of Geophysical Research vol.109, C05003, 15 pages.
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Grün, R., Spooner, N.A., Thorne, A., Mortimer, G., Simpson, J.J., McCulloch, M.T., Taylor, L. and Curnoe, D. (2000) Age of the Lake Mungo 3 skeleton, reply to Bowler & Magee and to Gillespie & Roberts. Journal of Human Evolution, 38: 733-741.
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Hayward DC , Miller DJ and Ball EE (2004) snail expression during embryonic development of the coral Acropora: blurring the diploblast/triploblast divide? Dev. Genes Evol. 214:257-260.
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Hayward DC, Samuel G, Pontynen PC, Catmull J, Saint R, Miller DJ and Ball EE (2002) Localized expression of a dpp/BMP2/4 ortholog in a coral embryo. Proc. of the Nat. Acad. of Sci. 99(12):8106-8111.
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Hellstrom, J.C., McCulloch, M.T. (2000) Multi-proxy constraints on the climatic significance of trace element records from a New Zealand speleothem. Earth and Planetary Science Letters, 179: 287-297.
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Hendy EJ, Gagan MK, Alibert CA, McCulloch MT, Lough JM and Isdale PJ (2002) Abrupt decrease in tropical Pacific sea surface salinity at end of Little Ice Age. Science 295:1511-1514.
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Hendy EJ, Lough JM and Gagan MK (2003) Historical mortality in massive Porites from the central Great Barrier Reef, Australia: evidence for past environmental stress? Coral Reefs 22:207-215.
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Hendy, E.J., Gagan, M.K., Alibert, C.A., McCulloch, M.T., Lough, J.M. and Isdale, P.J. (2002) Abrupt decrease in tropical Pacific Sea surface salinity at end of Little Ice Age, Science, 295, 1511-1514

Hobbs JPA and Munday PL (2004) Intraspecific competition controls spatial distribution and social organisation of the coral-dwelling goby Gobiodon histrio. Mar. Ecol. Prog. Ser. 278:253-259.
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Hobbs JPA, Munday PL and Jones GP (2004) Social induction of maturation and sex determination in a coral reef fish. Proc. Royal Society Lond. 271:2109-2114.
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Hoegh-Guldberg O, Jones RJ, Ward S and Loh WK (2002) Is coral bleaching really adaptive? Nature 415:601-602.
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Hoegh-Guldberg O, Muscatine L, Goiran C, Siggaard D and Marion G (2004) Nutrient-induced perturbations to δ 13C and δ 15N in symbiotic dinoflagellates and their coral hosts. Mar. Ecol. Prog. Ser. 280:105-114.
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Hoegh-Guldberg, O (2004) Coral Reefs and Projections of Future Change. In: Coral Health and Disease, Rosenberg E and Loya Y (Eds.), Springer-Verlag Berlin, pp 463-484.
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Hoegh-Guldberg, O (2004) Coral reefs in a century of rapid environmental change.  Symbiosis 37(1-3):1-31.
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Hoey AS and McCormick MI (2005) Effects of subcataneous fluorescent tags on the growth and survival of a newly settled coral reef fish, Pomacentrus amboinensis (Pomacentridae). Proc. 10 th Intern. Coral Reef Symp.

Hoey AS and McCormick MI (2004) Selective predation for low body condition at the larval-juvenile transition of a coral reef fish. Oecologia 139:23-29.
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Hughes TP and Tanner JE (2000) Recruitment failure, life histories, and long-term decline of Caribbean corals. Ecology 81(8):2250-2263.
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Hughes TP, Baird AH, Dinsdale EA, Harriot VJ, Moltschaniwskyj NA, Pratchett MS, Tanner JE and Willis BL (2002) Detecting regional variation using meta-analysis and large-scale sampling: latitudinal patterns in recruitment. Ecology 83(2):436-451.
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Hughes TP, Baird AH, Bellwood DR, Card M, Connolly SR, Folke C, Grosberg R, Hoegh-Guldberg O, Jackson JBC, Kleypas J, Lough JM, Marshall P, Nystrom M, Palumbi SR, Pandolfi JM, Rosen B, Roughgarden J (2003b) Causes of coral reef degradation – Response. Science 302: 1503-1504.
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Hughes TP, Baird AH, Bellwood DR, Card M, Connolly SR, Folke C, Grosberg R, Hoegh-Guldberg O, Jackson JBC, Kleypas J, Lough JM, Marshall P, Nyström M, Palumbi SR, Pandolfi JM, Rosen B and Roughgarden J (2003) Climate change, human impacts and the resilience of coral reefs. Science 301: 929-933.
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Hughes TP, Baird AH, Dinsdale EA, Moltschaniwskyj NA, Pratchett MS, Tanner JE and Willis BL (2000) Supply-side ecology works both ways: the link between benthic adults, fecundity, and larval recruits. Ecology 81(8):2241-2249.
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Hughes TP, Bellwood DR and Connolly SR (2002) Biodiversity hotspots, centres of endemicity, and the conservation of coral reefs. Ecology Letters 5:775-784.
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Jackson JBC, Kirby MX, Berger WH, Bjorndal KA, Botsford LW, Bourque BJ, Bradbury RH, Cooke R, Erlandson J, Estes JA, Hughes TP, Kidwell S, Lange CB, Lenihan HS, Pandolfi JM, Peterson CH, Steneck RS, Tegner MJ and Warner RR (2001) Historical overfishing and the recent collapse of coastal ecosystems. Science 293:629-638.
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Jompa J and McCook LJ (2002) The effects of nutrients and herbivory on competition between a hard coral (Porites cylindrica) and a brown alga (Lobophora variegata). Limnol. and Ocean. 47(2):527-534.
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Jompa J and McCook LJ (2003) Contrasting effects of turf algae on corals: massive Porites spp. Are unaffected by mixed-species turfs, but killed by the red alga Anotrichium tenue. Mar. Ecol. Prog. Ser. 258:79-86.
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Jompa J and McCook LJ (2003) Coral-algal competition: macroalgae with different properties have different effects on corals. Mar. Ecol. Prog. Ser. 258:87-95.
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Jones GP and McCormick MI (2002) Numerical and energetic processes in the ecology of fish populations on coral reefs. In: Coral Reef Fishes – Dynamics and Diversity in a Complex Ecosystem (Sale PF,ed) pp 221-238, Academic Press, San Diego.
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Jones GP , Ayling AM and Francis M (2003) Wrasses. In: “The living reef: The ecology of New Zealand’s rocky reefs” (Andrew NL and Francis M, eds) pp 174-181, Craig Potton Publishing, Nelson.

Jones GP , Caley MJ and Munday PL (2002) Rarity in coral reef fish communities. In: “Coral Reef Fishes – Dynamics and diversity in a complex ecosystem” (Sale PF, ed) pp 81-102, Academic Press, San Diego.

Jones GP , McCormick MI, Srinivasan M and Eagle JV (2004) Coral decline threatens fish biodiversity in marine reserves. Proc. of the Nat. Acad. of Sci. 101: 8251-8253.
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Jones RJ, Bowyer J, Hoegh-Guldberg O and Blackall LL (2004). Dynamics of a temperature-related coral disease outbreak. Mar. Ecol. Prog. Ser. 281:63-77.
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Jones RJ, Ward S, Amri AY and Hoegh-Guldberg O (2000) Changes in quantum efficiency of Photosystem II of symbiotic dinoflagellates of corals after heat stress, and of bleached corals sampled after the 1998 Great Barrier Reef mass bleaching event. Marine and Freshwater Res. 51:63-71.
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Karlson RH, Cornell HV, Hughes TP (2004) Coral communities are regionally enriched along an oceanic biodiversity gradient. Nature 429:867-870.
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Kingsford MJ, Leis J, Shanks A, Lindeman K, Morgan S, Pineda J (2002) Sensory environments, larval abilities and local self-recruitment. Bull. Mar. Sci 70:309-340
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Kingsford, M.J. (2001) Diel patterns of arrival of reef fish to a coral reef: One Tree Island, Great Barrier Reef. Mar. Biol. 138: 853-868
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Kingsford, M.J. (2003) The distribution patterns of exploited girellid, sparid and kyphosid fishes on temperate rocky reefs in New South Wales, Australia. Fisheries Science 68: Suppl I: 131-134

Kingsford, M.J., Gillanders, B.M. (2001) Variation in concentrations of trace elements in the otoliths and eye lenses of a temperate reef fish, Parma microlepis: comparisons by depth, spatial scale and age. Mar. Biol. 137: 403-416
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Kortschak RD , Samuel G, Saint R and Miller DJ (2003) EST analysis of the Cnidarian Acropora millipora reveals extensive gene loss and rapid sequence divergence in the model invertebrates. Current Biology 13:2190-2195.
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LaJeunesse TC, Bhagooli R, Hidaka M, deVantier L, Done T, Schmidt GW, Fitt WK and Hoegh-Guldberg O (2004) Closely related Symbiodinium spp. differ in relative dominance in coral reef host communities across environmental, latitudinal and biogeographic gradients. Mar. Ecol. Prog. Ser. 284:147-161.
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LaJeunesse TC, Loh WKW, van Woesik R, Hoegh-Guldberg O, Schmidt GW, and Fitt WK (2003) Low symbiont diversity in southern Great Barrier Reef corals relative to those of the Caribbean. Limnol. and Ocean. 48:2046-2054.
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Leggat W, Buck BH, Grice A and Yellowlees D (2003) The impact of bleaching on the metabolic contribution of dinoflagellate symbionts to their giant clam host. Plant, Cell and Environment 26:1951-1961.
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Leggat W, Marendy EM, Baillie B, Whitney SM, Ludwig M, Badger MR and Yellowlees D ( 2002) Dinoflagellate symbioses: strategies and adaptations for the acquisition and fixation of inorganic carbon. Functional Plant Biology 29:309-322.
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Leggat W, Whitney S and Yellowlees D (2004) Is coral bleaching due to the instability of the zooxanthellae dark reactions? Symbiosis 37(1-3):137-153.
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Leis JM and McCormick MI (2002) The biology, behavior, and ecology of the pelagic, larval stage of coral reef fishes. In: Coral Reef Fishes – Dynamics and Diversity in a Complex Ecosystem (Sale PF, ed) pp 171-200, Academic Press, San Diego.

Leuzinger S, Anthony KRN, Willis BL (2003) Reproductive energy investment in corals: scaling with module size. Oecologia 135:524-531.
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Little AF, van Opppen MJH, and Willis BL (2004) Flexibility in algal endosymbioses shapes in growth in reef corals. Science 304:1492-1494.
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Loh, WKW, Loi T, Carter DA and Hoegh-Guldberg O (2001) Genetic variability of the symbiotic dinoflagellates from the wide ranging coral species, Seriatopora hystrix and Acropora longicyathus, in the Indo-West Pacific. Mar. Eco. Prog. Ser. 222:97-107.
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Lough JM (2000) Unprecedented thermal stress to coral reefs? Geophys. Res. Letters 27(23):3901-3904.
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Lough JM (2004) A strategy to improve the contribution of coral data to high-resolution paleoclimatology. Palaeogeography, Palaeoclimatology, Palaeoecology 204:115-143.
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Lough JM and Barnes DJ (2000) Environmental controls on growth of the massive coral Porites. J. of Exp. Mar. Bio. and Ecol. 245:225-243.
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Lough JM, Barnes DJ and McAllister FA (2002) Luminescent lines in corals from the Great Barrier Reef provide spatial and temporal records of reefs affected by land runoff. Coral Reefs 21:333-343.
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MacKenzie JB, Munday PL, Willis BL, Miller DJ and van Oppen MJH (2004) Unexpected patterns of genetic structuring among locations but not colour morphs in Acropora nasuta (Cnidaria;Scleractinia). Mol. Ecol. 13:9-20.
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Marquez LM, Miller DJ, MacKenzie JB and van Oppen MJH (2003) Pseudogenes contribute to the extreme diversity of nuclear ribosomal DNA in the hard coral Acropora. Mol. Bio. and Evol. 20(7):1077-1086.
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Marquez LM, van Oppen MJH, Willis BL and Miller DJ (2002) Sympatric populations of the highly cross-fertile coral species Acropora hyacinthus and Acropora cytherea are genetically distinct. Proc. Royal Society Lond. 269:1289-1294.
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Marquez LM, van Oppen MJH, Willis BL, Reyes A and Miller DJ (2002) The highly cross-fertile coral species, Acropora hyacinthus and Acropora cytherea, constitute statistically distinguishable lineages. Mol. Ecol. 11:1339-1349.
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Marshall PA and Baird AH (2000) Bleaching of corals on the Great Barrier Reef: differential susceptibilities among taxa. Coral Reefs 19:155-163.
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Marshall , J.F. and McCulloch, M.T. (2001) Evidence of El Niño and the Indian Ocean Dipole from Sr/Ca derived SSTs for modern corals at Christmas Island, eastern Indian Ocean. Geophys. Res. Letters, 28, 18: 3453-3456.
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Marshall , J.F. and McCulloch, M.T. (2002)An assessment of the Sr/Ca ratio in shallow water hermatypic corals as a proxy for sea surface temperature, Geochimica et Cosmochimica Acta, 66, 188: 3263-3280
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McClanahan TR, Baird AH, Marshall PA, and Toscano MA (2004) Comparing bleaching and mortality responses of hard corals between southern Kenya and the Great Barrier Reef, Australia. Mar. Pollution Bull. 48:327-335.
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McCook LJ, Jompa J and Diaz-Pulido G (2001) Competition between corals and algae on coral reefs: a review of evidence and mechanisms. Coral Reefs 19:400-417.
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McCormick MI (2003) Consumption of coral propagules after mass spawning enhances larval quality of damselfish through maternal effects. Oecologia 136:37-45.
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McCormick MI and Hoey AS (2004) Larval growth history determines juvenile growth and survival in a tropical marine fish. Oikos 106:225-242.
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McCormick MI and Nechaev IV (2002) Influence of cortisol on developmental rhythms during embryogenesis in a tropical damselfish. J. of Exp. Zoology 293:456-466.
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McCormick MI and Smith S (2004) Efficacy of passive integrated transponder tags to determine spawning-site visitations by a tropical fish. Coral Reefs 23:570-577.

McCormick MI, Makey L and Dufour V (2002) Comparative study of metamorphosis in tropical reef fishes. Marine Biology 141:841-853.
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McCulloch, M., Fallon, S.R., Wyndham, T., Hendy, E., Lough, J. and Barnes, D. (2003) Coral Record of increased sediment flux to the inner Great Barrier Reef since European settlement, Nature, 421: 727-730
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McCulloch, M., Pailles, C., Moody, P. and Martin, C.E. (2003) Tracing the source of sediment and phosphorus into the Great Barrier Reef lagoon, Earth Planet. Sci. Letters, 210: 249-258
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McCulloch, M.T., Mortimer, G., Alibert, C, and Marshall, J. (2000) El Niño and the coral record of sea surface temperature from the Great Barrier Reef, Australia. In El Niño History and Crisis (Grove, R.H. and Chappell, J. eds). The White Horse Press, Cambridge, 51-65.

McCulloch, Malcolm, T., Esat, Tezer. (2000) The coral record of last interglacial sea levels and sea surface temperatures. Chemical Geology, 169: 107-129.
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McGregor HV and Gagan MK (2004) Western Pacific coral δ 18O records of anomalous Holocene variability in the El Ni Ô o-Southern Oscillation. Geophys. Res. Letters vol 31, L11204, 4 pages.
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Michalek-Wagner K and Willis BL(2001a) Impacts of bleaching on the soft coral Lobophytum compactum. I. Fecundity, fertilisation and offspring viability. Coral Reefs 19:231-239.
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Michalek-Wagner K and Willis BL (2001b) Impacts of bleaching on the soft coral Lobophytum compactum. II. Biochemical changes in adults and their eggs. Coral Reefs19:240-246.
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Miller DJ and van Oppen MJH (2003) A ‘fair go’ for coral hybridization. Mol. Ecol. 12:805-807.
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Miller-Sims, V., Atema, J., et al. (2004). Characterisation and isolation of DNA microsatellite primers in the cardinalfish ((Apogon doederleini). Molecular Ecology Notes 4: 336-338
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Miller-Sims, V. Delaney, M., Atema, J. Kingsford, M. Gerlach, G. (2005) Primer Note: DNA microsatellite in the neon damselfish (Pomacentrus coelestis) Molecular Ecology Notes 5: 424-426
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Moland E and Jones GP (2004) Experimental confirmation of aggressive mimicry by a coral reef fish. Oecologia 140:676-683.
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Montagno P., McCulloch, Taviani M., Remia A., Rouse G., (2005) High- resolution trace and minor element compositions in deep-water scleractinian corals (Desmophyllum dianthus) from the Mediterranean Sea and the Great Australian Bight in Freiwald A., Roberts J.M., (eds) Cold-water Corals and Ecosystems. Springer-Verlag Berlin Heidelberg, pp 1109-1126.
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Moore RB, Ferguson KM, Loh WKW, Hoegh-Guldberg O and Carter DA (2003) Highly organized structure in the non-coding region of the psbA minicircle from clade C Symbiodinium. Intern. J. of Systematic and Evol. Microbio. 53:1725-1734.
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Moriarty, Kevin C., McCulloch, Malcolm T., Wells, Roderick, T. and McDowell, Mathew C. (2000) Mid-Pleistocene cave fills, megafaunal remains and climate change at Naracoorte, South Australia: towards a predictive model using U-Th dating of speleothems. Palaeogeography, Palaeoclimatology, Palaeoecology, 159: 113-143.
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Muller A, Gagan MK and Lough JM (2004) Effect of early marine diagenesis on coral reconstructions of surface-ocean 13C/ 12C and carbonate saturation state. Global Biogeochemical Cycles vol 18, GB1033, 8 pages.
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Müller, A., Gagan, M.K. and McCulloch, M.T. (2001) Early marine diagenesis in corals and geochemical consequences for paleoceanographic reconstructions. Geophys. Res. Letters, 28, 23: 4471-4474.
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Müller, W. Fricke, H., Halliday, A.N., McCulloch, M.T. and Wartho. J. (2003) Origin and Migration of the Alpine Iceman, Science, 302, 862-866.(See related commentary in Science’s Focus by Constance Holden (2003): Isotopic Data Pinpoint Iceman’s Origins. Science, Vol 302, pp. 759-761.)
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Müller, W., Fricke, H., Halliday, A.N., McCulloch, M.T.: (2003) Origin of the Alpine Iceman – constraints from isotope geochemistry. In: Fleckinger, A. (ed.): Die Gletschermumie aus der Kupferzeit 2 / La mummia dell’ eta del rame 2 (Proceedings of scientific congress to celebrate the 10th anniversary of the discovery of the Iceman; Bolzano, Italy), Schriften des Südtiroler Archäologiemuseums / Collana del Museo Archeologico dell’ Alto Adige 3: 75-90.

Munday PL (2004) Competitive coexistence of coral-dwelling fishes: the lottery hypothesis revisited. Ecology 85(3):623-628.
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Munday PL (2004) Habitat loss, resource specialization, and extinction on coral reefs. Global Change Biology 10:1642-1647.
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Munday PL , Eyre PJ and Jones GP (2003) Ecological mechanisms for co-existence of colour polymorphism in a coral-reef fish: an experimental evaluation. Oecologia 442:519-526.
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Munday PL , Hodges AL, Choat JH and Gust N (2004) Sex-specific growth effects in protogynous hermaphrodites. Canadian J. Fish. Aquat. Sci. 61:323:327.
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Munday PL , Jones GP and Caley MJ (2001) Interspecific competition and coexistence in a guild of coral-dwelling fishes. Ecology 82(8):2177-2189.
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Munday PL, Schubert M, Baggio JA, Jones GP, Caley MJ and Llewellyn LE (2003) Skin toxins and external parasitism in coral-dwelling gobies. J. of Fish Biology 62:976-981.
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Munday PL , van Herwerden L and Dudgeon CL (2004) Evidence for sympatric speciation by host shift in the sea. Current Biology 14:1498-1504.
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Munday, PL, Pierce SJ, Jones GP and Larson HK (2002) Habitat use, social organisation and reproductive biology of the seawhip goby Bryaninops yongei. Marine and Freshwater Res. 53:769-776.
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Nardi K, Jones GP, Moran MJ and Cheng YW (2004) Contrasting effects of marine protected areas on the abundances of two exploited reef fishes at the sub-tropical Houtman Abrolhos Islands, Western Australia. Environ. Conserv. 31:160-169.
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Neef, G. and McCulloch, M.T. (2001) Pliocene-Quaternary history of Futuna Island, south Vanuata, southwest Pacific. Australian Journal of Earth Sciences, 48: 805-814.
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Nilsson GE, Hobbs JP, Munday PL and Öslund-Nilsson S (2004) Coward or braveheart: extreme habitat fidelity through hypoxia tolerance in a coral-dwelling goby. J. Exp. Bio. 207:33-39.
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Nordström K, Scholten I, Nordström J, Larhammar D, Miller DJ (2003) Mutational analysis of the Acropora millepora PaxD paired domain highlights the importance of the linker region for DNA binding. Gene 320:81-87.
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Norman, M., Bennett, V., McCulloch, M. and Kinsley, L. (2002) Osmium isotopic compositions by vapor phase sample introduction using a multi-collector ICP-MS, J. Anal. At. Spectrom, 17: 1394-1397
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Nowak, B., Kingsford, M.J. (2003) Exposure ro Thiodan results in lipofiscin accumulation in hepatocytes of the freshwater catfish Tandanus tandanus. Diseases of Aquatic Organisms. 56: 135-143
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Pandolfi JM (2001) Numerical and taxonomic scale of analysis in paleoecological data sets: examples from Neo-tropical Pleistocene reef coral communities. J. Paleontology 75: 546-563.
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Pandolfi JM (2002) Coral community dynamics at multiple scales. Coral Reefs 21:13-23.
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Pandolfi JM and Jackson JBC (2001) Community structure of Pleistocene coral reefs of Curaçao, Netherlands Antilles. Ecological Monographs 71:49-67.
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Pandolfi JM, Jackson JBC and Geister J (2001) Geologically sudden natural extinction of two widespread Late Pleistocene Caribbean reef corals. In: Evolutionary Patterns: Growth, Form and Tempo in the Fossil Record (Jackson JBC, Lidgard S, and McKinney FK, eds) University of Chicago Press, Chicago, pp 120-158.

Pandolfi JM, Lovelock CE and Budd AF (2002) Character release following extinction in a caribbean reef coral species complex. Evolution 56(3):479-501.
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Pandolfi, JM, Bradbury RH, Sala E, Hughes TP, Bjorndal KA ,Cooke RG, McArdle D, McClenachan L, Newman MJH, Paredes G, Warner RR and Jackson JBC (2003) Global trajectories of the long-term decline of coral reef systems. Science 301: 955-958.
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Patterson, H. M., Kingsford, M. J., and McCulloch, M.T. (2004) Elemental signatures of Pomacentus coelestis otoliths at multiple spatial scales on the Great Barrier Reef, Australia. Mar Ecol Prog Ser., Vol 270, 229-239.
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Patterson, H. M., Kingsford, M. J., and McCulloch, M.T. (2004) The influence of oceanic and lagoonal plume waters on otolith chemistry. Canadian J. Fish Aquatic Sci., 61: 899-904.
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Pitt, K. , Kingsford, M.J. (2003) Temporal variability in the pre-harvest biomass of the edible jellyfish, Catostylus mosaicus (Scyphozoa, Rhizostomeae). Fisheries Research 63: 303-313
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Pitt, K., Kingsford, M.J. (2003) Recruitment and growth of medusae of the schyphozoan jellyfish, Catostylus mosaicus (O. Rhizostomeae), Mar. Freshwater Res. 54: 117-125
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Pitt, K.A., Kingsford, M.J. (2000). Geographic separation of stocks of the edible jellyfish, Catostylus mosaicus (Rhizostomeae) in New South Wales, Australia. Mar. Ecol. Prog. Ser. 196: 143-155
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Pitt, K.A., Kingsford, M.J. (2000). Reproductive biology of the edible jellyfish Catostylus mosaicus (Rhizostomeae). Mar. Biol. 137: 791-799
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Plaza S, De Jong DM, Gehring WJ and Miller DJ (2003) DNA-binding characteristics of Cnidarian Pax-C and Pax-B proteins in vivo and in vitro: no simple relationship with the Pax-6 and Pax-2/5/8 classes. J. Exp. Zoology (Mol Dev Evol) 299B:26-35.
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Pratchett MS, Wilson SK, Berumen ML, McCormick MI (2004) Sublethal effects of coral bleaching on an obligate coral feeding butterflyfish. Coral Reefs 23:352-356.
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Prescott M, Ling M, Beddoe T, Oakley AJ, Dove S, Hoegh-Guldberg O, Devenish RJ and Rossjohn J (2003) The 2.2 Å crystal structure of a pocilloporin pigment reveals a nonplanar chromophore conformation. Structure 11:275-84.
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Ren L, Linsley BK, Wellington GM,  Schrag DP and Hoegh-Guldberg O (2002) Deconvolving the δ 18O seawater component from subseasonal coral δ 18O and Sr/Ca at Rarotonga in the southwestern subtropical Pacific for the period 1726 to 1997.   Geochimica et Cosmochimica Acta 67(9):1609-1621.
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Ridgway T, Hoegh-Guldberg O and Ayre D (2001) Panmixia in Pocillopora verrucosa from South Africa.  Marine Biology 139:175-181.
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Rodriguez-Lanetty M and Hoegh-Guldberg O (2002) The phylogeography and connectivity of the latitudinally widespread scleractinian coral Plesiastrea versipora in the Western Pacific.  Molecular Ecology 11:1177-1189.
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Rodriguez-Lanetty M and Hoegh-Guldberg O (2003) Symbiont diversity within the widespread Scleractinian coral Plesiastrea versipora, across the northwestern Pacific.  Marine Biology (2003) 143:501-509.
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Rodriguez-Lanetty M,  Loh W, Carter D and Hoegh-Guldberg O (2001) Latitudinal variability in symbiont specificity within the widespread scleractinian coral Plesiastrea versiporaMarine Biology, 138:1175-1181.
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Russ GR (2002) Marine reserves as reef fisheries management tools: yet another review. In: Coral Reef Fishes – Dynamics and Diversity in a Complex Ecosystem (Sale PF, ed) pp 421-443, Academic Press, San Diego.
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Russ GR and Alcala AC (2003) Marine reserves: rates and patterns of recovery and decline of predatory fish, 1983-2000. Ecological Applications 13(6):1553-1565.
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Russ GR and Alcala AC (2004) Marine reserves: long-term protection is required for full recovery of predatory fish populations. Oecologia 138:622-627.
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Russ GR, Alcala AC and Maypa AP (2003) Spillover from marine reserves: the case of Naso vlamingii at Apo Island, the Philippines. Mar. Ecol. Prog. Ser. 264:15-20.
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Russ GR, Alcala AC, Maypa AP, Calumpong HP and White AT (2004) Marine Reserve Benefits Local Fisheries. Ecological Applications 14(2):597-606.
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Salih A, Larkum A, Cox G, Kühl M and Hoegh-Guldberg O (2000) Fluorescent pigments in corals are photoprotective. Nature 408:850-853.
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Sampey A, Meekan MG, Carleton JH, McKinnon AD and McCormick MI (2004) Temporal patterns in distributions of tropical fish larvae on the North-west shelf of Australia. Marine and Freshwater Res. 55:473:487.
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Sanchez, P. Gillanders, BG, Kingsford MJ. (2002). Spatial variation in abundance of prey and diet of trumpeter Pelates sexstriatus: Terapontidae associated with Zostera capricorni seagrass meadows. Austral Ecology. 27: 200-210
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Saxby T, Dennison WC and Hoegh-Guldberg O (2003) Photosynthetic responses of the coral Montipora digitata to cold temperature stress. Mar. Eco. Prog. Ser. 248:85-97.
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Schubert M, Munday PL, Caley MJ, Jones GP and Llewellyn LE (2003) The toxicity of skin secretions from coral-dwelling gobies and their potential role as a predator deterrent. Environ. Bio. of Fishes 67:359-367.
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Shearer TL, van Oppen MJH, Romano SL and Wōrheide G (2002) Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria). Mol. Ecol. 11:2475-2487.
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Sinclair, D.J., McCulloch, M.T. (2004) Corals record low mobile barium concentrations in the Burdekin River during the 1974 flood: evidence for limited Ba supply to rivers? Paleo, 214: 155-174.
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Sinton, J.M., Ford, L.L., Chappell, B., and McCulloch, M.T. (2003) Magma genesis and mantle heterogeneity in the Manus Back-Arc Basin, Papua New Guinea, Journal of Petrology, 44: 1, 159-195
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Sivell, W.J. and McCulloch, M.T. (2000) Reassessment of the origin of the Dun Mountain Ophiolite, New Zealand: Nd-isotopic and geochemical evolution of magma suites. New ZealandJ. Geol. & Geophy, 2000, 43: 133-146.
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Sivell, W.J. and McCulloch, M.T. (2001) Geochemical and Nd-isotopic systematics of the Permo-Triassic Gympie Group, southeast Queensland, Australian Journal of Earth Sciences, 48, 377-395
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Sponaugle S et al. (2002) Predicting self-recruitment in marine populations: Biophysical correlates and mechanisms. Bulletin of Marine Science Special Publications 70:341-375
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Stewart BD and Jones GP (2001) Associations between the abundance of piscivorous coral reef fish and their prey: implications for prey fish mortality. Marine Biology 138:383-397.
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Stirling , C.H., Esat, T.M., Lambeck, K., McCulloch, M.T., Blake, S.G., Lee, D. C., Halliday, A.N. (2001) Orbital Forcing of the Marine Isotope Stage 9 Interglacial. Science, 291: 290-293.

Suzuki A, Gagan MK, Fabricius K, Isdale PJ, Yukino I and Kawahata H (2003) Skeletal isotope microprofiles of growth perturbations in Porites corals during the 1997-1998 mass bleaching event. Coral Reefs 22:357-369.
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Swearer SE, Shima JS, Hellberg ME, Thorrold SR, Jones GP, Robertson DR, Morgan SG Selkoe KA, Ruiz GM, and Warner RR (2002) Evidence for self-recruitment in demersal marine populations. Bulletin of Marine Science 70:251-271.
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Syms C and Jones GP (2000) Disturbance, habitat structure, and the dynamics of a coral reef fish community. Ecology 81:2714-2729.
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Syms C and Jones GP (2001) Soft corals exert no direct effects on coral reef fish assemblages. Oecologia 127:560-571.
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Syms C and Jones GP (2004) Habitat structure, disturbance and the composition of sand-dwelling goby assemblages in a coral reef lagoon. Mar. Ecol. Prog. Ser. 268:221-230.
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Takabayashi M, Carter DA, Lopez JV and Hoegh-Guldberg O (2003) Genetic variation of the scleractinian coral Stylophora pistillata, from western Pacific reefs. Coral Reefs 22:17-22.
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Thorrold SR, J ones GP, Hellberg ME, Burton RS, Swearer SE, Niegel JE, Morgan SG and Warner RR (2002) Quantifying larval retention and connectivity in marine populations with artificial and natural markers: can we do it right? Bulletin of Marine Science 70:291-308.
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Tricklebank, K.A., Kingsford, M.J., Rose, H.A. (2002). Organochlorine pesticides and Hexachlorobenzene along the Sydney coast: multi-scale distributions using the territorial damselfish Parma microlepis as an indicator. Environ. Poll. 116: 319-335
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Tudhope, A.W., Chilcott, C.P., McCulloch, M.T., Cook, E.R., Chappell, J., Ellam, R.M., Lea, D.W., Lough, J.M. and Shimmield, G.B. (2001) Variability in the El Niño – Southern Oscillation Through a Glacial-Interglacial Cycle. Science, 291: 1511-1517.
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Ulstrup KE and van Oppen MJH (2003) Geographic and habitat partitioning of genetically distinct zooxanthellae (Symbiodinium) in Acropora corals on the Great Barrier Reef. Mol. Ecol. 12:3477-3484.
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van Oppen MJH (2003) Cross-breeding the key to coral success. Australasian Science Nov/Dec pp. 35-36.

van Oppen MJH (2004) Mode of zooxanthella transmission does not affect zooxanthella diversity in acroporid corals. Marine Biology 144:1-7
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van Oppen MJH, McDonald BJ, Willis BL and Miller DJ (2001) The evolutionary history of the coral genus Acropora (Scleractinia,Cnidaria) based on a mitochondrial and a nuclear marker: Reticulation, incomplete lineage sorting, or morphological convergence? Mol. Biol. Evol. 18(7):1315-1329.

van Oppen MJH, Palstra FP, Piquet AMT and Miller DJ (2001) Patterns of coral-dinoflagellate associations in Acropora: significance of local availability and physiology of Symbiodinium strains and host-symbiont selectivity. Proc. Royal Society of Lond. 268:1759-1767.
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van Oppen MJH, Willis BL, van Rheede TV and Miller DJ (2002) Spawning times, reproductive compatibilities and genetic structuring in the Acropora aspera group: evidence for natural hybridization and semi-permeable species boundaries in corals. Mol. Ecol. 11:1363-1376.
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van Oppen MJH, Willis BL, van Vugt HWJA and Miller DJ (2000) Examination of species boundaries in the Acropora cervicornis group (Scleractinia, Cnidaria) using nuclear DNA sequence analyses. Mol. Ecol. 9:1363-1373.
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van Oppen MJH, Wörheide G and Takabayashi M (2005) Nuclear markers in evolutionary and population genetic studies of scleractinian corals and sponges. Proc. 10 th Intern. Coral Reef Symp.
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Vytopil E and Willis BL (2001) Epifaunal community structure in Acropora spp. on the Great Barrier Reef: Implications of coral morphology. Coral Reefs 20:281-288.
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Walker SPW and McCormick MI (2004) Otolith-check formation and accelerated growth associated with sex change in an annual protogynous tropical fish. Mar. Ecol. Prog. Ser. 266:201-212.
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Walther GR, Post E, Convey P, Menzel A, Parmesan C, Beebee T, Fromentin JM, Hoegh-Guldberg O and Bairlein F (2001) Ecological responses to recent climate change. Nature 416:389-395.
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Wasson, J.M., Caitcheon G., Murray A.S., McCulloch, M.T., and Quade J. (2002) Sourcing sediment using multiple tracers in the catchment of Lake Argyle, Northwestern Australia. Environmental Management. 29: 634-646.
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Watanabe T, Gagan MK, Corrège T, Scott-Gagan H, Cowley J and Hantoro WS (2003) Oxygen isotope systematics in Diploastrea heliopora: new coral archive of tropical paleoclimate. Geochimica et Cosmochimica Acta 67(7):1349-1358.
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Williamson DH, Russ GR and Ayling AM (2004) No-take marine reserves increase abundance and biomass of reef fish on inshore fringing reefs of the Great Barrier Reef. Environ. Conservation 31(2):149-159.
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Willis BL, Page CA and Dinsdale EA (2004) Coral disease on the Great Barrier Reef. In: Coral Health and Disease, Rosenberg E and Loya Y (Eds), Springer-Verlag, Berlin, pp 69-104.
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Wolanski E, Richmond R, McCook LJ and Sweatman H (2003) Mud, marine snow and coral reefs. TheAmerican Scientist 91:44-51.
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Woodroffe CD, Beech MR and Gagan MK (2003) Mid-late Holocene El Ni Ô o variability in the equatorial Pacific from coral microatolls. Geophys. Res. Letters vol 30(7), 1358, 4 pages.
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Wyndham, T., McCulloch, M., Fallon, S., and Alibert, C. (2004) High resolution coral records of rare earth elements in coastal seawater: Biogeochemical cycling and a new environmental proxy, Geochimica et Cosmochimica Acta, 68: 2067-2080.
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Zhang, M., Stephenson, P.J., O’Reilly, S., McCulloch, M.T. and Norman, M. (2001) Petrogenesis and Geodynamic Implications of Late Cenozoic Basalts in North Queensland, Australia: Trace-element and Sr-Nd-Pb Isotope Evidence. Journal of Petrology, 42: 4, 685-719.
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