Scientific Publications 2012

Journal Articles [320]

Abrego, D, Willis, B and van Oppen, M (2012). Impact of light and temperature on the uptake of algal symbionts by coral juveniles. PLOS ONE. 7(11): e50311.
Link to full text or pdf

Adams, VM; Pressey, RL and Stoeckl, N (2012). Estimating land and conservation management costs: The first step in designing a stewardship program for the Northern Territory. Biological Conservation. 148(1): 44-53.
Link to full text or pdf

Albouy, C, Guilhaumon, F, Araujo, MB, Mouillot, D and Leprieur, F (2012). Combining projected changes in species richness and composition reveals climate change impacts on coastal Mediterranean fish assemblages. Global Change Biology. 18(10): 2995-3003.
Link to full text or pdf

Andréfouët, S and Hamel, MA (2012). Habitat mapping for conservation planning in Baa Atoll, Republic of Maldives. Atoll Research Bulletin. 590: 207-222.
Link to full text or pdf

Andréfouët, S, Hamel, MA and Dalleau, M (2012). Distinction between effective pattern-based and selection-based biodiversity surrogates is essential: caveats for managers. Marine Ecology Progress Series. 452: 287-295.
Link to full text or pdf

Andutta, F, Kingsford, M and Wolanski, E (2012). ‘Sticky water’ enables the retention of larvae in a reef mosaic. Estuarine Coastal and Shelf Science. 101: 54-63.
Link to full text or pdf

Attenborough, R, Hayward, D, Kitahara, M, Miller, D and Ball, E (2012). A “neural” enzyme in non-bilateral animals and algae: pre-neural origins for peptidylglycine α-amidating monooxygenase (PAM). Molecular Biology and Evolution. 29(10): 3095-3104.
Link to full text or pdf

Auge, AA, Moore, AB and Chilvers, BL (2012). Predicting interactions between recolonising marine mammals and fisheries: defining precautionary management. Fisheries Management and Ecology. 19(5): 426-433.
Link to full text or pdf

Bainbridge, Z, Wolanski, E, Alvarez-Romero, JG, Lewis, S and Brodie, J (2012). Fine sediment and nutrient dynamics related to particle size and floc formation in a Burdekin River flood plume, Australia. Marine Pollution Bulletin. 65: 236–248.
Link to full text or pdf

Baird, A, Sommer, B and Madin, J (2012). Pole-ward range expansion of Acropora spp. along the east coast of Australia. Coral Reefs. 31: 1063.
Link to full text or pdf

Baird, AH, Campbell, SJ, Fadli, N, Hoey, AS and Rudi, E (2012). The shallow water hard corals of Pulau Weh, Aceh Province, Indonesia. Aquaculture, Aquarium, Conservation and Legislation. 5(1): 23-28.
Link to full text or pdf

Ban, NC, Cinner, JE, Adams, VM, Mills, M, Almany, GR, Ban, SS, McCook, LJ and White, A (2012). Recasting shortfalls of marine protected areas as opportunities through adaptive management. Aquatic Conservation-Marine and Freshwater Ecosystems. 22(2): 262-271.
Link to full text or pdf

Ban, NC, Pressey, RL and Weeks, S (2012). Conservation objectives and sea-surface temperature anomalies in the Great Barrier Reef. Conservation Biology. 26(5): 799-809.
Link to full text or pdf

Barbosa, M, Connolly, SR, Hisano, M, Dornelas, M and Magurran, AE (2012). Fitness consequences of female multiple mating: a direct test of indirect benefits. BMC Evolutionary Biology. 12(185): 1-11.
Link to full text or pdf

Barnes, L, Bellwood, D, Sheaves, M and Tanner, J (2012). The use of clear-water non-estuarine mangroves by reef fishes on the Great Barrier Reef. Marine Biology. 159(1): 211-220.
Link to full text or pdf

Beeden, R, Maynard, JA, Marshall, PA, Heron, SF and Willis, BL (2012). A framework for responding to coral disease outbreaks that facilitates adaptive management. Environmental Management. 49(1): 1-13.
Link to full text or pdf

Beldade, R, Holbrook, SJ, Schmitt, RJ, Planes, S, Malone, D and Bernardi, G (2012). Larger female fish contribute disproportionately more to self-replenishment. Proceedings of the Royal Society B-Biological Sciences. 279(1736): 2116-2121.
Link to full text or pdf

Bellantuono, A, Granados-Cifuentes, C, Miller, D, Hoegh-Guldberg, O and Rodriguez-Lanetty, M (2012). Coral thermal tolerance: tuning gene expression to resist thermal stress. PLOS ONE. 7(11): e50685.
Link to full text or pdf

Bellantuono, AJ, Hoegh-Guldberg, O and Rodriguez-Lanetty, M (2012). Resistance to thermal stress in corals without changes in symbiont composition. Proceedings of the Royal Society B-Biological Sciences. 279(1731): 1100-1107.
Link to full text or pdf

Bellwood, DR, Baird, AH, Depczynski, M, González-Cabello, A, Hoey, AS, Lefevre, CD and Tanner, JK (2012). Coral recovery may not herald the return of fishes on damaged coral reefs. Oecologia. 170: 567-573.
Link to full text or pdf

Bellwood, DR, Hoey, AS and Hughes, TP (2012). Human activity selectively impacts the ecosystem roles of parrotfishes on coral reefs. Proceedings of the Royal Society B: Biological Sciences. 270(1733): 1621-1629.
Link to full text or pdf

Bender, D, Diaz-Pulido, G and Dove, S (2012). Effects of macroalgae on corals recovering from disturbance. Journal of Experimental Marine Biology and Ecology. 429: 15–19.
Link to full text or pdf

Berkstrom, C, Jones, GP, McCormick, MI and Srinivasan, M (2012). Ecological versatility and its importance for the distribution and abundance of coral reef wrasses. Marine Ecology-Progress Series. 461: 151-163.
Link to full text or pdf

Berumen, M, Trip, E, Pratchett, M and Choat, J (2012). Differences in demographic traits of four butterflyfish species between two reefs of the Great Barrier Reef separated by 1,200 km. Coral Reefs. 31(1): 169-177.
Link to full text or pdf

Berumen, ML, Almany, GR, Planes, S, Jones, GP, Saenz-Agudelo, P and Thorrold, SR (2012). Persistence of self-recruitment and patterns of larval connectivity in a marine protected area network. Ecology and Evolution. 2(2): 444-52.
Link to full text or pdf

Biggs, D, Ban, N and Hall, C (2012). Lifestyle values, resilience, and nature-based tourism’s contribution to conservation on Australia’s Great Barrier Reef. Environmental Conservation. 39: 370-379.
Link to full text or pdf

Biggs, D, Hall, CM and Stoeckl, N (2012). The resilience of formal and informal tourism enterprises to disasters: Reef tourism in Phuket, Thailand. Journal of Sustainable Tourism. 20(5): 645-665.
Link to full text or pdf

Biggs, R, Schluter, M, Biggs, D, Bohensky, EL, Burnsilver, S, Cundill, G, Dakos, V, Daw, TM, Evans, LS, Kotschy, K, Leitch, AM, Meek, C, Quinlan, A, Raudsepp-Hearne, C, Robards, MD, Schoon, ML, Schultz, L and West, PC (2012). Toward principles for enhancing the resilience of ecosystem services. Annual Review of Environment and Resources. 37: 421-48.
Link to full text or pdf

Blackwood, JC, Hastings, A and Mumby, PJ (2012). The effect of fishing on hysteresis in Caribbean coral reefs. Theoretical Ecology. 5(1): 105-114.
Link to full text or pdf

Blower, D, Pandolfi, J, Bruce, B, Gomez-Cabrera, M and Ovenden, J (2012). Population genetics of Australian white sharks reveals fine-scale spatial structure, transoceanic dispersal events and low effective population sizes. Marine Ecology Progress Series. 455: 229-244.
Link to full text or pdf

Blowes, SA and Connolly, SR (2012). Risk spreading, connectivity, and optimal reserve spacing. Ecological Applications. 22(1): 311-321.
Link to full text or pdf

Boaden, E and Kingsford, MJ (2012). Diel behaviour and trophic ecology of Scolopsis bilineatus (Nemipteridae). Coral Reefs. 31(3): 871-883.
Link to full text or pdf

Bode, M, Connolly, S and Pandolfi, JM (2012). Species differences drive nonneutral structure in Pleistocene coral communities. American Naturalist. 180: 577–588.
Link to full text or pdf

Boldt, L, Yellowlees, D and Leggat, W (2012). Hyperdiversity of genes encoding integral light-harvesting proteins in the Dinoflagellate Symbiodinium sp. PLOS ONE. 7(10): e47456.
Link to full text or pdf

Bonaldo, R, Welsh, J and Bellwood, D (2012). Spatial and temporal variation in coral predation by parrotfishes on the Great Barrier Reef: evidence from an inshore reef. Coral Reefs. 31(1): 263-272.
Link to full text or pdf

Bongaerts, P, Hoeksema, B, Hay, K and Hoegh-Guldberg, O (2012). Mushroom corals overcome live burial through pulsed inflation. Coral Reefs. 31(2): 399.
Link to full text or pdf

Bonin, M (2012). Specializing on vulnerable habitat: Acropora selectivity among damselfish recruits and the risk of bleaching-induced habitat loss. Coral Reefs. 31(1): 287-297.
Link to full text or pdf

Bosiger, YJ, Lonnstedt, OM, McCormick, MI and Ferrari, MCO (2012). Learning temporal patterns of risk in a predator-diverse environment. PLOS ONE. 7(4): e34535.
Link to full text or pdf

Bottrill, MC, Mills, M, Pressey, RL, Game, ET and Groves, C (2012). Evaluating perceived benefits of ecoregional assessments. Conservation Biology. 26(5): 851-861.
Link to full text or pdf

Bottrill, MC and Pressey, RL (2012). The effectiveness and evaluation of conservation planning. Conservation Letters. 5: 407-420.
Link to full text or pdf

Brewer, TD, Cinner, J, Fisher, R, Green, A and Wilson, S (2012). Market access, population density, and socioeconomic development explain diversity and functional group biomass of coral reef fish assemblages. Global Environmental Change. 22: 399-406.
Link to full text or pdf

Bridge, T, Beaman, R, Done, T and Webster, J (2012). Predicting the location and spatial extent of submerged coral reef habitat in the Great Barrier Reef World Heritage Area, Australia. PLOS ONE. 7(10): e48203.
Link to full text or pdf

Bridge, T, Scott, A and Steinberg, D (2012). Abundance and diversity of anemonefishes and their host sea anemones at two mesophotic sites on the Great Barrier Reef, Australia. Coral Reefs. 31: 1057–1062.
Link to full text or pdf

Briffa, M, De La Haye, K and Munday, PL (2012). High CO2 and marine animal behaviour: Potential mechanisms and ecological consequences. Marine Pollution Bulletin. 64(8): 1519-1528.
Link to full text or pdf

Bromfield, K and Pandolfi, J (2012). Regional patterns of evolutionary turnover in Neogene coral reefs from the central Indo-West Pacific Ocean. Evolutionary Ecology. 26(2): 375-391.
Link to full text or pdf

Bruggemann, JH, Rodier, M, Guillaume, MMM, Andréfouët, S, Arfi, R, Cinner, JE, Pichon, M, Ramahatratra, F, Rasoamanendrika, F, Zinke, J and Mcclanahan, TR (2012). Wicked social–ecological problems forcing unprecedented change on the latitudinal margins of coral reefs: the case of southwest Madagascar. Ecology and Society. 17(4): 47.
Link to full text or pdf

Budd, AF, Nunes, FLD, Weil, E and Pandolfi, JM (2012). Polymorphism in a common Atlantic reef coral (Montastraea cavernosa) and its long-term evolutionary implications. Evolutionary Ecology. 26(2): 265-290.
Link to full text or pdf

Burrows, MT, Schoeman, DS, Duarte, CM, O’Connor, MI, Buckley, LB, Kappel, CV, Parmesan, C, Halpern, BS, Brown, C, Brander, KM, Bruno, JF, Pandolfi, JM, Sydeman, WJ, Moore, P, Kiessling, W, Richardson, AJ and Poloczanska, ES (2012). Invasive species unchecked by climate response. Science. 335(6068): 538-539.
Link to full text or pdf

Busilacchi, S, Williams, AJ; Russ, GR and Begg, GA (2012) Complexity of applying minimum legal sizes (MLS) of retention in an indigenous coral reef fishery. Fisheries Management and Ecology. 19(3): 233-244.
Link to full text or pdf

Buston, PM, Jones, GP, Planes, S and Thorrold, SR (2012). Probability of successful larval dispersal declines fivefold over 1 km in a coral reef fish. Proceedings of the Royal Society B-Biological Sciences. 279(1735): 1883-1888.
Link to full text or pdf

Caballes, CF, Schupp, PJ, Pratchett, MS and Rivera-Posada, JA (2012). Interspecific transmission and recovery of TCBS-induced disease between Acanthaster planci and Linckia guildingi. Diseases of Aquatic Organisms. 100(3): 263-7.
Link to full text or pdf

Campbell, S, Cinner, J, Ardiwijaya, R, Herdiana, Y, Kartawijaya, T, Mukminin, A, Hoey, A, Pratchett, M and Baird, A (2012). Avoiding conflicts and protecting coral reefs: Customary management of fishing gear protects habitat and fish biomass in Aceh, Indonesia. Oryx. 46: 486-494.
Link to full text or pdf

Campbell, S, Hoey, A, Maynard, J, Kartawijaya, T, Cinner, J, Graham, N and Baird, A (2012). Weak compliance undermines the success of no-take zones in a large government-controlled marine protected area. PLOS ONE. 7(11): e50074.
Link to full text or pdf

Carpenter, SR, Arrow, KJ, Barrett, S, Biggs, R, Brock, WA, Crépin, A-S, Engström, G, Folke, C, Hughes, TP, Kautsky, N, Li, C-Z, Mccarney, G, Meng, K, Mäler, K-G, Polasky, S, Scheffer, M, Shogren, J, Sterner, T, Vincent, JR, Walker, B, Xepapadeas, A and Zeeuw, AD (2012). General resilience to cope with extreme events. Sustainability Science. 4(12): 3248-3259.
Link to full text or pdf

Carpenter, SR, Arrow, KJ, Barrett, S, Biggs, R, Brock, WA, Crépin, A-S, Engström, G, Folke, C, Hughes, TP, Kautsky, N, Li, C-Z, Mccarney, G, Meng, K, Mäler, K-G, Polasky, S, Scheffer, M, Shogren, J, Sterner, T, Vincent, JR, Walker, B, Xepapadeas, A and Zeeuw, AD (2012). General resilience to cope with extreme events. Sustainability Science. 4(12): 3248-3259.
Link to full text or pdf

Carpenter, SR, Folke, C, Norström, A, Olsson, O, Schultz, L, Agarwal, B, Balvanera, P, Campbell, B, Castilla, JC, Cramer, W, Defries, R, Eyzaguirre, P, Hughes, TP, Polasky, S, Sanusi, Z, Scholes, R and Spierenburg, M (2012). Program on ecosystem change and society: An international research strategy for integrated social–ecological systems. Current Opinion in Environmental Sustainability. 4(1): 134-138.
Link to full text or pdf

Ceccarelli, D and Williamson, D (2012). Sharks that eat sharks: Opportunistic predation by wobbegongs. Coral Reefs. 31(2): 471-471.
Link to full text or pdf

Cerutti-Pereyra, F, Meekan, MG, Wei, N-WV, O’Shea, O, Bradshaw, CJA and Austin, CM (2012). Identification of rays through DNA barcoding: An application for ecologists. PLOS ONE. 7(6): e36479.
Link to full text or pdf

Chan, NCS, Connolly, SR and Mapstone, BD (2012). Effects of sex change on the implications of marine reserves for fisheries. Ecological Applications. 22(3): 778-791.
Link to full text or pdf

Chollett, I, Muller-Karger, F, Heron, S, Skirving, W and Mumby, P (2012). Seasonal and spatial heterogeneity of recent sea surface temperature trends in the Caribbean Sea and southeast Gulf of Mexico. Marine Pollution Bulletin. 64(5): 956-965.
Link to full text or pdf

Chollett, I and Mumby, P (2012). Predicting the distribution of Montastraea reefs using wave exposure. Coral Reefs. 31(2): 493-503.
Link to full text or pdf

Chollett, I, Mumby, P, Muller-Karger, F and Hu, C (2012). Physical environments of the Caribbean Sea. Limnology and Oceanography. 57(4): 1233-1244.
Link to full text or pdf

Chong-Seng, KM, Mannering, TD, Pratchett, MS, Bellwood, DR and Graham, NA (2012). The influence of coral reef benthic condition on associated fish assemblages. PLOS ONE. 7(8): e42167.
Link to full text or pdf

Cinner, JE, Basurto, X, Fidelman, P, Kuange, J, Lahari, R and Mukminin, A (2012). Institutional designs of customary fisheries management arrangements in Indonesia, Papua New Guinea, and Mexico. Marine Policy. 36(1): 278-285.
Link to full text or pdf

Cinner, JE, Daw, TM, McClanahan, TR, Muthiga, N, Abunge, C, Hamed, S, Mwaka, B, Rabearisoa, A, Wamukota, A, Fisher, E and Jiddawi, N (2012). Transitions toward co-management: The process of marine resource management devolution in three east African countries. Global Environmental Change-Human and Policy Dimensions. 22(3): 651-658.
Link to full text or pdf

Cinner, JE, McClanahan, TR, Graham, NAJ, Daw, TM, Maina, J, Stead, SM, Wamukota, A, Brown, K and Bodin, Ö (2012). Vulnerability of coastal communities to key impacts of climate change on coral reef fisheries. Global Environmental Change. 22(1): 12-20.
Link to full text or pdf

Cinner, JE, Mcclanahan, TR, Macneil, MA, Graham, NAJ, Daw, TM, Mukminin, A, Feary, DA, Rabearisoa, AL, Wamukota, A, Jiddawi, N, Campbell, SJ, Baird, AH, Januchowski-Hartley, FA, Hamed, S, Lahari, R, Morove, T and Kuange, J (2012). Co-management of coral reef social-ecological systems. Proceedings of the National Academy of Sciences. 109(14): 5219–5222
Link to full text or pdf

Cinner, JE and Pomeroy, RS (2012). People and the sea: A festschrift dedicated to the career of Richard Pollnac. Coastal Management. 40(3): 235-238.
Link to full text or pdf

Clark, NJ and Russ, GR (2012). Ontogenetic shifts in the habitat associations of butterflyfishes (F. Chaetodontidae). Environmental Biology of Fishes. 94(4): 579-590.
Link to full text or pdf

Clark, TR, Zhao, JX, Feng, YX, Done, TJ, Jupiter, S, Lough, J and Pandolfi, JM (2012). Spatial variability of initial 230Th/232 in modern Porites from the inshore region of the Great Barrier Reef. Geochimica et Cosmochimica Acta. 78: 99-118.
Link to full text or pdf

Claydon, J, McCormick, M and Jones, G (2012). Patterns of migration between feeding and spawning sites in a coral reef surgeonfish. Coral Reefs. 31(1): 77-87.
Link to full text or pdf

Cohen, PJ, Evans, LS and Mills, M (2012). Social networks supporting governance of coastal ecosystems in Solomon Islands. Conservation Letters. 5: 376-386.
Link to full text or pdf

Coker, D, Graham, N and Pratchett, M (2012). Interactive effects of live coral and structural complexity on the recruitment of reef fishes. Coral Reefs. 31: 919–927.
Link to full text or pdf

Coker, DJ, Pratchett, MS and Munday, PL (2012). Influence of coral bleaching, coral mortality and conspecific aggression on movement and distribution of coral-dwelling fish. Journal of Experimental Marine Biology and Ecology. 414: 62-68.
Link to full text or pdf

Cole, AJ, Lawton, RJ, Wilson, SK and Pratchett, MS (2012). Consumption of tabular acroporid corals by reef fishes: A comparison with plant-herbivore interactions. Functional Ecology. 26(2): 307-316.
Link to full text or pdf

Connolly, SR, Lopez-Yglesias, MA and Anthony, KRN (2012). Food availability promotes rapid recovery from thermal stress in a scleractinian coral. Coral Reefs. 31: 951–960.
Link to full text or pdf

Connolly, SR and Thibaut, LM (2012). A comparative analysis of alternative approaches to fitting species-abundance models. Journal of Plant Ecology. 5(1): 32-45.
Link to full text or pdf

Cooper, TF, O’Leary, RA and Lough, JM (2012). Growth of Western Australian corals in the Anthropocene. Science. 335(6068): 593-596.
Link to full text or pdf

Cumbo, VR, Fan, T-Y and Edmunds, PJ (2012). Scleractinian corals capture zooplankton within days of settlement and metamorphosis. Coral Reefs. 31: 1155.
Link to full text or pdf

Cundill, G, Cumming, GS, Biggs, D and Fabricius, C (2012). Soft systems thinking and social learning for adaptive management. Conservation Biology. 26(1): 13-20.
Link to full text or pdf

Daw, TM, Cinner, JE, McClanahan, TR, Brown, K, Stead, SM, Graham, NA and Maina, J (2012). To fish or not to fish: Factors at multiple scales affecting artisanal fishers’ readiness to exit a declining fishery. PLOS ONE. 7(2): e31460.
Link to full text or pdf

De Wit, P, Pespeni, M, Ladner, J, Barshis, D, Seneca, F, Jaris, H, Therkildsen, N, Morikawa, M and Palumbi, S (2012). The simple fool’s guide to population genomics via RNA-Seq: An introduction to high-throughput sequencing data analysis. Molecular Ecology Resources. 12(6): 1058-1067.
Link to full text or pdf

Devine, B, Munday, P and Jones, G (2012). Rising CO2 concentrations affect settlement behaviour of larval damselfishes. Coral Reefs. 31(1): 229-238.
Link to full text or pdf

Devine, BM, Munday, PL and Jones, GP (2012). Homing ability of adult cardinalfish is affected by elevated carbon dioxide. Oecologia. 168(1): 269-276.
Link to full text or pdf

Devlin, M, Mckinna, LI, Alvarez-Romero, JG, Petus, C, Abbot, B, Harkness, P and Brodie, J (2012). Mapping the pollutants in surface riverine flood plume waters in the Great Barrier Reef, Australia. Marine Pollution Bulletin. 65: 224–235.
Link to full text or pdf

Diaz-Pulido, G, Anthony, KRN, Kline, DI, Dove, S and Hoegh-Guldberg, O (2012). Interactions between ocean acidification and warming on the mortality and dissolution of coralline algae. Journal of Phycology. 48(1): 32-39.
Link to full text or pdf

Dissard, D, Douville, E, Reynaud, S, Juillet-Leclerc, A, Montagna, P, Louvat, P and McCulloch, M (2012). Light and temperature effect on δ11B and B/Ca ratios of the zooxanthellate coral Acropora sp.: Results from culturing experiments. Biogeosciences. 9(5): 5969-6014.
Link to full text or pdf

Dixson, D (2012). Predation risk assessment by larval reef fishes during settlement-site selection. Coral Reefs. 31(1): 255-261.
Link to full text or pdf

Dixson, DL, Pratchett, MS and Munday, PL (2012). Reef fishes innately distinguish predators based on olfactory cues associated with recent prey items rather than individual species. Animal Behaviour. 84(1): 45-51.
Link to full text or pdf

Domenici, P, Allan, B, McCormick, MI and Munday, PL (2012). Elevated carbon dioxide affects behavioural lateralization in a coral reef fish. Biology Letters. 8(1): 78-81.
Link to full text or pdf

Donelson, JM and Munday, PL (2012). Thermal sensitivity does not determine acclimation capacity for a tropical reef fish. Journal of Animal Ecology. 81(5): 1126-1131.
Link to full text or pdf

Donelson, JM, Munday, PL and McCormick, MI (2012). Climate change may affect fish through an interaction of parental and juvenile environments. Coral Reefs. 31(3): 753-762.
Link to full text or pdf

Donelson, JM, Munday, PL, McCormick, MI and Pitcher, CR (2012). Rapid transgenerational acclimation of a tropical reef fish to climate change. Nature Climate Change. 2(1): 30-32.
Link to full text or pdf

Doropoulos, C, Ward, S, Diaz-Pulido, G, Hoegh-Guldberg, O and Mumby, PJ (2012). Ocean acidification reduces coral recruitment by disrupting intimate larval-algal settlement interactions. Ecology Letters. 15(4): 338-346.
Link to full text or pdf

Doropoulos, C, Ward, S, Marshell, A, Diaz-Pulido, G and Mumby, PJ (2012). Interactions among chronic and acute impacts on coral recruits: the importance of size-escape thresholds. Ecology. 93(10): 2131–2138.
Link to full text or pdf

Dunn, SR, Pernice, M, Green, K, Hoegh-Guldberg, O and Dove, SG (2012). Thermal stress promotes host mitochondrial degradation in symbiotic cnidarians: Are the batteries of the reef going to run out? PLOS ONE. 7(7): e39024.
Link to full text or pdf

Dupont, S, Moya, A and Bailly, X (2012). Stable photosymbiotic relationship under CO2-induced acidification in the acoel worm Symsagittifera Roscoffensis. PLOS ONE. 7(1): e29568.
Link to full text or pdf

Eagle, J, Baird, A, Jones, G and Kingsford, M (2012). Recruitment hotspots: consistent spatial patterns in the relative abundance of coral recruits at One Tree Island, Australia. Galaxea. 14: 1-8.

Emblem, A, Karlsen, BO, Evertsen, J, Miller, DJ, Moum, T and Johansen, SD (2012). Mitogenome polymorphism in a single branch sample revealed by SOLiD deep sequencing of the Lophelia pertusa coral genome. Gene. 506(2): 344-349.
Link to full text or pdf

Emslie, M, Logan, M, Ceccarelli, D, Cheal, A, Hoey, A, Miller, I and Sweatman, H (2012). Regional-scale variation in the distribution and abundance of farming damselfishes on Australia’s Great Barrier Reef. Marine Biology. 159(6): 1293-1304.
Link to full text or pdf

Fabinyi, M (2012). Historical, cultural and social perspectives on luxury seafood consumption in China. Environmental Conservation. 39(1): 83-92.
Link to full text or pdf

Fabinyi, M, Pido, M, Harani, B, Caceres, J, Uyami-Bitara, A, De Las Alas, A, Buenconsejo, J and De Leon, EMP (2012). Luxury seafood consumption in China and the intensification of coastal livelihoods in Southeast Asia: The live reef fish for food trade in Balabac, Philippines. Asia Pacific Viewpoint. 53(2): 118-132.
Link to full text or pdf

Fadli, N, Campbell, S, Ferguson, K, Keyse, J, Rudi, E , Riedel, A and Baird, A (2012). The role of habitat creation in coral reef conservation: a case study from Aceh, Indonesia. Oryx. 46: 501-507.
Link to full text or pdf

Falter, JL, Lowe, RJ, Atkinson, MJ and Cuet, P (2012). Seasonal coupling and de-coupling of net calcification rates from coral reef metabolism and carbonate chemistry at Ningaloo Reef, Western Australia. Journal of Geophysical Research-Oceans. 117: doi:10.1029/2011jc007268.
Link to full text or pdf

Feeney, WE, Lonnstedt, OM, Bosiger, Y, Martin, J, Jones, GP, Rowe, RJ and McCormick, MI (2012). High rate of prey consumption in a small predatory fish on coral reefs. Coral Reefs. 31(3): 909-918.
Link to full text or pdf

Fenberg, P, Caselle, J, Claudet, J, Clemence, M, Gaines, S, Garcia-Charton, J, Goncalves, E, Grorud-Colvert, K, Guidetti, P, Jenkins, S, Jones, P, Lester, S, Mcallen, R, Moland, E, Planes, S and Sorensen, T (2012). The science of European marine reserves: status, efficacy, and future needs. Marine Policy. 36(5): 1012-1021.
Link to full text or pdf

Ferrari, MCO, Manassa, RP, Dixson, DL, Munday, PL, McCormick, MI, Meekan, MG, Sih, A and Chivers, DP (2012). Effects of ocean acidification on learning in coral reef fishes. PLOS ONE. 7(2): e31478.
Link to full text or pdf

Ferrari, MCO, McCormick, MI, Munday, PL, Meekan, MG, Dixson, DL, Loennstedt, O and Chivers, DP (2012). Effects of ocean acidification on visual risk assessment in coral reef fishes. Functional Ecology. 26(3): 553-558.
Link to full text or pdf

Ferrari, R, Gonzalez-Rivero, M and Mumby, P (2012). Size matters in the competition among corals and macroalgae. Marine Ecology Progress Series. 467: 77-88.
Link to full text or pdf

Ferrari, R, Gonzalez-Rivero, M, Ortiz, JC and Mumby, PJ (2012). Interaction of herbivory and seasonality on the dynamics of Caribbean macroalgae. Coral Reefs. 31(3): 683-692.
Link to full text or pdf

Fidelman, P and Ekstrom, JA (2012). Mapping seascapes of international environmental arrangements in the Coral Triangle. Marine Policy. 36(5): 993-1004.
Link to full text or pdf

Fidelman, P, Evans, L, Fabinyi, M, Foale, S, Cinner, J and Rosen, F (2012). Governing large-scale marine commons: Contextual challenges in the Coral Triangle. Marine Policy. 36(1): 42-53.
Link to full text or pdf

Field, IC, Buckworth, RC, Yang, G-J, Meekan, MG, Johnson, G, Stevens, JD, Pillans, RD, McMahon, CR and Bradshaw, CJA (2012). Changes in size distributions of commercially exploited sharks over 25 years in northern Australia using a Bayesian approach. Fisheries Research. 125: 262-271.
Link to full text or pdf

Fielding, KS, Head, BW, Laffan, W, Western, M and Hoegh-Guldberg, O (2012). Australian politicians’ beliefs about climate change: political partisanship and political ideology. Environmental Politics. 21(5): 712-733.
Link to full text or pdf

Figueiredo, J, Baird, A, Cohen, M, Flot, JF, Kamiki, T, Meziane, T, Tsuchiya, M and Yamasaki, H (2012). Ontogenetic change in the lipid and fatty acid composition of scleractinian coral larvae. Coral Reefs. 31(2): 613-619.
Link to full text or pdf

Figueiredo, J and Connolly, SR (2012). Dispersal-mediated coexistence under recruitment limitation and displacement competition. Ecological Modelling. 243: 133-142.
Link to full text or pdf

Figueiredo, J, Lin, J, Anto, J and Narciso, L (2012). The consumption of DHA during embryogenesis as an indicative of the need to supply DHA during early larval development: a review. Journal of Aquaculture Research and Development. 3(5): 1-7.
Link to full text or pdf

Fisher, P, Malme, M and Dove, S (2012). The effect of temperature stress on coral – Symbiodinium associations containing distinct symbiont types. Coral Reefs. 31(2): 473-485.
Link to full text or pdf

Flores, F, Hoogenboom, MO, Smith, LD, Cooper, T, Abrego, D and Negri, A (2012). Chronic exposure of corals to fine sediments: lethal and sub-lethal impacts PLOS ONE. 7(5): e37795
Link to full text or pdf

Foster, NL, Paris, CB, Kool, JT, Baums, IB, Stevens, JR, Sanchez, JA, Bastidas, C, Agudelo, C, Bush, P, Day, O, Ferrari, R, Gonzalez, P, Gore, S, Guppy, R, McCartney, MA, McCoy, C, Mendes, J, Srinivasan, A, Steiner, S, Vermeij, MJA, Weil, E and Mumby, PJ (2012). Connectivity of Caribbean coral populations: complementary insights from empirical and modelled gene flow. Molecular Ecology. 21(5): 1143-1157.
Link to full text or pdf

Foster, R, Bridge, T and Bongaerts, P (2012). The first record of Hippocampus denise (Syngnathidae) from Australia. Aqua: International Journal of Ichthyology. 18(1): 55-57.
Link to full text or pdf

Frisch, AJ, Cole, AJ, Hobbs, J-PA, Rizzari, JR and Munkres, KP (2012). Effects of spearfishing on reef fish populations in a multi-use conservation area. PLOS ONE. 7(12): e51938.
Link to full text or pdf

Frisch, AJ and Hobbs, J-PA (2012). Demography, fishery yield and potential management strategies of painted spiny lobster (Panulirus versicolor) at Northwest Island, Great Barrier Reef, Australia. Marine and Freshwater Research. 63(5): 387-396.
Link to full text or pdf

Fuentes, M, Fish, MR and Maynard, JA (2012). Management strategies to mitigate the impacts of climate change on sea turtle’s terrestrial reproductive phase. Mitigation and Adaptation Strategies for Global Change. 17(1): 51-63.
Link to full text or pdf

Gillanders, B, Black, B, Meekan, M and Morrison, M (2012). Climatic effects on the growth of a temperate reef fish from the Southern Hemisphere: A biochronological approach. Marine Biology. 159(6): 1327-1333.
Link to full text or pdf

Glas, MS, Sato, Y, Ulstrup, KE and Bourne, DG (2012). Biogeochemical conditions determine virulence of black band disease in corals. ISME Journal. 6(8): 1526-1534.
Link to full text or pdf

Goatley, C, Hoey, A and Bellwood, D (2012). The role of turtles as coral reef macroherbivores. PLOS ONE. 7(6): e39979.
Link to full text or pdf

Gonzalez-Rivero, M, Ferrari, R, Schonberg, C and Mumby, P (2012). Impacts of macroalgal competition and parrotfish predation on the growth of a common bioeroding sponge. Marine Ecology Progress Series. 444: 133-142.
Link to full text or pdf

Grech, A, Chartrand-Miller, K, Erftemeijer, P, Fonseca, M, McKenzie, L, Rasheed, M, Taylor, H and Coles, R (2012). A comparison of threats, vulnerabilities and management approaches in global seagrass bioregions. Environmental Research Letters. 7(2): 024006.
Link to full text or pdf

Guest, J, Baird, A, Maynard, J, Muttaqin, E, Edwards, A, Campbell, S, Yewdall, K, Affendi, YA and Chou, LM (2012). Contrasting patterns of coral bleaching susceptibility in 2010 suggest an adaptive response to thermal stress. PLOS ONE. 7: e33353.
Link to full text or pdf

Guest, JR, Baird, AH, Goh, BPL and Chou, LM (2012). Sexual systems in scleractinian corals: an unusual pattern in the reef-building species Diploastrea heliopora. Coral Reefs. 31(3): 705-713.
Link to full text or pdf

Hagedorn, M, Van Oppen, M, Carter, V, Henley, M, Abrego, D, Puill-Stephan, E, Negri, A, Heyward, A, Macfarlane, D and Spindler, R (2012). First frozen repository for the Great Barrier Reef coral created. Cryobiology. 65(2): 157-158.
Link to full text or pdf

Halpern, B, Diamond, J, Gaines, S, Gelcich, S, Gleason, M, Jennings, S, Lester, S, Mace, A, Mccook, L, Mcleod, K, Napoli, N, Rawson, K, Rice, J, Rosenberg, A, Ruckelshaus, M, Saier, B, Sandifer, P, Scholz, A and Zivian, A (2012). Near-term priorities for the science, policy and practice of Coastal and Marine Spatial Planning (CMSP). Marine Policy. 36(1): 198-205.
Link to full text or pdf

Hamel, MA and Andréfouët, S (2012). Biodiversity-based propositions of conservation areas in Baa Atoll, Republic of Maldives. Atoll Research Bulletin. 590: 223-235.
Link to full text or pdf

Harborne, AR (2012). Seasonal variation in the functional response of a coral-reef piscivore alters the inverse density-dependent mortality of its prey. Coral Reefs. 31(1): 247–251.
Link to full text or pdf

Harborne, AR, Jelks, HL, Smith-Vaniz, WF and Rocha, LA (2012). Abiotic and biotic controls of cryptobenthic fish assemblages across a Caribbean seascape. Coral Reefs. 31: 977–990.
Link to full text or pdf

Harborne, A, Mumby, P and Ferrari, R (2012). The effectiveness of different meso-scale rugosity metrics for predicting intra-habitat variation in coral-reef fish assemblages. Environmental Biology of Fishes. 94(2): 431-442.
Link to full text or pdf

Harnik, PG, Lotze, HK, Anderson, SC, Finkel, ZV, Finnegan, S, Lindberg, DR, Liow, LH, Lockwood, R, McClain, CR, McGuire, JL, O’Dea, A, Pandolfi, JM, Simpson, C and Tittensor, DP (2012). Extinctions in ancient and modern seas. Trends in Ecology & Evolution. 27(11): 608-17.
Link to full text or pdf

Harrison, HB, Williamson, DH, Evans, RD, Almany, GR, Thorrold, SR, Russ, GR, Feldheim, KA, Van Herwerden, L, Planes, S, Srinivasan, M, Berumen, ML and Jones, GP (2012). Larval export from marine reserves and the recruitment benefit for fish and fisheries. Current Biology. 22(11): 1023-1028.
Link to full text or pdf

Hastings, J, Thomas, S, Burgener, V, Gjerde, K, Laffoley, D, Salm, R, McCook, L, Pet-Soede, L, Eichbaum, WM, Bottema, M, Hemley, G, Tanzer, J, Roberts, CM, Govan, H and Fox, HE (2012). Safeguarding the Blue Planet: Six strategies for accelerating ocean protection. Parks. 18(1): 13.
Link to full text or pdf

Heatwole, H, Grech, A, Monahan, JF, King, S and Marsh, H (2012). Thermal biology of sea snakes and sea kraits. Integrative and Comparative Biology. 52(2): 257-273.
Link to full text or pdf

Hedley, J, Roelfsema, C, Phinn, S and Mumby, P (2012). Environmental and sensor limitations in optical remote sensing of coral reefs: Implications for monitoring and sensor design. Remote Sensing. 4(1): 271-302.
Link to full text or pdf

Hendy, EJ, Tomiak, PJ, Collins, MJ, Hellstrom, J, Tudhope, AW, Lough, JM and Penkman, KEH (2012). Assessing amino acid racemization variability in coral intra-crystalline protein for geochronological applications. Geochimica et Cosmochimica Acta. 86: 338-353.
Link to full text or pdf

Hicks, CC and McClanahan, TR (2012). Assessing gear modifications needed to optimize yields in a heavily exploited, multi-species, seagrass and coral reef fishery. PLOS ONE. 7(5): e36022.
Link to full text or pdf

Hobbs, J-PA, Jones, GP, Munday, PL, Connolly, SR and Srinivasan, M (2012). Biogeography and the structure of coral reef fish communities on isolated islands. Journal of Biogeography. 39(1): 130-139.
Link to full text or pdf

Hodge, JR, Read, CI, Van Herwerden, L and Bellwood, DR (2012). The role of peripheral endemism in species diversification: evidence from the coral reef fish genus Anampses (Family: Labridae). Molecular Phylogenetics and Evolution. 62(2): 653-663.
Link to full text or pdf

Hoegh-Guldberg, O (2012). Coral reefs and adaptation to climate change: is the Red Queen being outpaced? Scientia Marina. 76(2): 403-408.
Link to full text or pdf

Hoey, AS, Bellwood, DR and Barnett, A (2012). To feed or to breed: Morphological constraints of mouthbrooding in coral reef cardinalfishes. Proceedings of the Royal Society B: Biological Sciences. 279(1737): 2426-2432.
Link to full text or pdf

Hoogenboom, MO, Campbell, DA, Beraud, E, Dezeeuw, K and Ferrier-Pages, C (2012). Effects of light, food availability and temperature stress on the function of photosystem II and photosystem I of coral symbionts. PLOS ONE. 7(1): e30167.
Link to full text or pdf

Horigue, V, Alino, PM, White, AT and Pressey, RL (2012). Marine protected area networks in the Philippines: Trends and challenges for establishment and governance. Ocean & Coastal Management. 64: 15-26.
Link to full text or pdf

Howells, EJ, Beltran, VH, Larsen, NW, Bay, LK, Willis, BL and Van Oppen, MJH (2012). Coral thermal tolerance shaped by local adaptation of photosymbionts. Nature Climate Change. 2: 116-120.
Link to full text or pdf

Hubert, N, Meyer, CP, Bruggemann, HJ, Guerin, F, Komeno, RJL, Espiau, B, Causse, R, Williams, JT and Planes, S (2012). Cryptic diversity in Indo-Pacific coral-reef fishes revealed by DNA-barcoding provides new support to the centre-of-overlap hypothesis. PLOS ONE. 7(3): e28987.
Link to full text or pdf

Hughes, S, Yaua, A, Max, L, Petrovicc, N, Davenport, F, Marshall, M, McClanahan, T, Allison, E and Cinner, J (2012). A framework to assess national level vulnerability from the perspective of food security: The case of coral reef fisheries. Environmental Science & Policy. 23: 95-108.
Link to full text or pdf

Hughes, TP, Baird, AH, Dinsdale, EA, Moltschaniwskyj, NA, Pratchett, MS, Tanner, JE and Willis, BL (2012). Assembly rules of reef corals are flexible along a steep climatic gradient. Current Biology. 22(8): 736-741.
Link to full text or pdf

Hyndes, GA, Lavery, PS and Doropoulos, C (2012). Dual processes for cross-boundary subsidies: Incorporation of nutrients from reef-derived kelp into a seagrass ecosystem. Marine Ecology-Progress Series. 445: 97-107.
Link to full text or pdf

Januchowski-Hartley, F, Nash, K and Lawton, R (2012). Influence of spear guns, dive gear and observers on estimating fish flight initiation distance on coral reefs. Marine Ecology Progress Series. 469: 113-119.
Link to full text or pdf

Januchowski-Hartley, SR, Moon, K, Stoeckl, N and Gray, S (2012). Social factors and private benefits influence landholders’ riverine restoration priorities in tropical Australia. Journal of Environmental Management. 110: 20-6.
Link to full text or pdf

Jimenez, H, Bigot, L, Bourmaud, C, Chabanet, P, Gravier-Bonnet, N, Hamel, M, Payri, C, Mattio, L, Menou, JL, Naeem, S, Rilwan, Y, Sattar, S, Scott, L, Shiham, A, Vigliola, L and Andréfouët, S (2012). Multi-taxa coral reef community structure in relation to habitats in the Baa Atoll Man and Biosphere UNESCO Reserve (Maldives), and implications for its conservation. Journal of Sea Research. 72: 77-86.
Link to full text or pdf

Johansson, CL, Bellwood, DR and Depczynski, M (2012). The importance of live coral for small-sized herbivorous reef fishes in physically challenging environments. Marine and Freshwater Research. 63(8): 672-679.
Link to full text or pdf

Jupiter, S, Weeks, R, Jenkins, A, Egli, D and Cakacaka, A (2012). Effects of a single intensive harvest event on fish populations inside a customary marine closure. Coral Reefs. 31(2): 321-334.
Link to full text or pdf

Kaniewska, P, Campbell, P, Kline, D, Rodriguez-Lanetty, M, Miller, D, Dove, S and Hoegh-Guldberg, O (2012). Major cellular impacts of ocean acidification on a reef-building coral. PLOS ONE. 7: e34659.
Link to full text or pdf

Kayal, M, Vercelloni, J, Lison De Loma, T, Bosserelle, P, Chancerelle, Y, Geoffroy, S, Stievenart, C, Michonneau, F, Penin, L, Planes, S and Adjeroud, M (2012). Predator Crown-of-Thorns Starfish (Acanthaster planci) outbreak, mass mortality of corals, and cascading effects on reef fish and benthic communities. PLOS ONE. 7(10): e47363.
Link to full text or pdf

Keith, SA, Webb, TJ, Böhning-Gaese, K, Connolly, SR, Dulvy, NK, Eigenbrod, F, Jones, KE, Price, T, Redding, DW, Owens, IPF and Isaac, NJB (2012). What is macroecology? Biology Letters. 8(6): 904-906.
Link to full text or pdf

Kerry, J and Bellwood, D (2012). The effect of coral morphology on shelter selection by coral reef fishes. Coral Reefs. 31(2): 415-424.
Link to full text or pdf

Kiessling, W, Simpson, C, Beck, B, Mewis, H and Pandolfi, JM (2012). Equatorial decline of reef corals during the last Pleistocene interglacial. Proceedings of the National Academy of Sciences. 109(52): 21378-21383.
Link to full text or pdf

Kingsford, MJ, Seymour, JE and O’Callaghan, MD (2012). Abundance patterns of cubozoans on and near the Great Barrier Reef. Hydrobiologia. 690(1): 257-268.
Link to full text or pdf

Kitahara, M, Stolarski, J, Cairns, S, Benzoni, F, Stake, J and Miller, D (2012). The first modern solitary Agariciidae (Anthozoa, Scleractinia) revealed by molecular and microstructural analysis. Invertebrate Systematics. 26: 303-315.
Link to full text or pdf

Kline, DI, Teneva, L, Schneider, K, Miard, T, Chai, A, Marker, M, Headley, K, Opdyke, B, Nash, M, Valetich, M, Caves, JK, Russell, BD, Connell, SD, Kirkwood, BJ, Brewer, P, Peltzer, E, Silverman, J, Caldeira, K, Dunbar, RB, Koseff, JR, Monismith, SG, Mitchell, BG, Dove, S and Hoegh-Guldberg, O (2012). A short-term in situ CO2 enrichment experiment on Heron Island (GBR). Scientific Reports. 2.
Link to full text or pdf

Kongjandtre, N, Ridgway, T, Cook, L, Huelsken, T, Budd, A and Hoegh-Guldberg, O (2012). Taxonomy and species boundaries in the coral genus Favia Milne Edwards and Haime, 1857 (Cnidaria: Scleractinia) from Thailand revealed by morphological and genetic data. Coral Reefs. 31(2): 581-601.
Link to full text or pdf

Kramer, MJ, Bellwood, DR and Bellwood, O (2012). Cryptofauna of the epilithic algal matrix on an inshore coral reef, Great Barrier Reef. Coral Reefs. 31: 1007–1015.
Link to full text or pdf

Krasnov, BR, Mouillot, D, Khokhlova, IS, Shenbrot, GI and Poulin, R (2012). Compositional and phylogenetic dissimilarity of host communities drives dissimilarity of ectoparasite assemblages: geographical variation and scale-dependence. Parasitology. 139(3): 338-347.
Link to full text or pdf

Kulbicki, M, Beets, J, Chabanet, P, Cure, K, Darling, E, Floeter, SR, Galzin, R, Green, A, Harmelin-Vivien, M, Hixon, M, Letourneur, Y, De Loma, TL, McClanahan, T, McIlwain, J, Moutham, G, Myers, R, O’Leary, JK, Planes, S, Vigliola, L and Wantiez, L (2012). Distributions of Indo-Pacific lionfishes Pterois spp. in their native ranges: Implications for the Atlantic invasion. Marine Ecology-Progress Series. 446: 189-205.
Link to full text or pdf

Kuo, CY, Yuen, YS, Meng, PJ, Ho, PH, Wang, JT, Liu, PJ, Chang, YC, Dai, CF, Fan, TY, Lin, HJ, Baird, AH and Chen, CA (2012). Recurrent disturbances and the degradation of hard coral communities in Taiwan. PLOS ONE. 7(8): e44364.
Link to full text or pdf

Kvennefors, ECE, Sampayo, E, Kerr, C, Vieira, G, Roff, G and Barnes, AC (2012). Regulation of bacterial communities through antimicrobial activity by the coral holobiont. Microbial Ecology. 63(3): 605-618.
Link to full text or pdf

Lawton, R and Pratchett, M (2012). Influence of dietary specialisation and resource availability on geographical variation in abundance of butterflyfishes. Ecology and Evolution. 2(7): 1347-1361.
Link to full text or pdf

Lawton, RJ, Cole, AJ, Berumen, ML and Pratchett, MS (2012). Geographic variation in resource use by specialist versus generalist butterflyfishes. Ecography. 35(6): 566-576.
Link to full text or pdf

Lawton, RJ, Pratchett, MS and Berumen, ML (2012). The use of specialisation indices to predict vulnerability of coral-feeding butterflyfishes to environmental change. Oikos. 121(2): 191-200.
Link to full text or pdf

Lema, KA, Willis, BL and Bourne, DG (2012). Corals form characteristic associations with symbiotic nitrogen-fixing bacteria. Applied and Environmental Microbiology. 78(9): 3136-3144.
Link to full text or pdf

Lemer, S and Planes, S (2012). Translocation of wild populations: Conservation implications for the genetic diversity of the black-lipped pearl oyster Pinctada margaritifera. Molecular Ecology. 21(12): 2949-2962.
Link to full text or pdf

Leuzinger, S, Willis, B and Anthony, K (2012). Energy allocation in a reef coral under varying resource availability. Marine Biology. 159(1): 177-186.
Link to full text or pdf

Lewis, S, Wust, R, Webster, J, Shields, G, Renema, W, Lough, J and Jacobsen, G (2012). Development of an inshore fringing coral reef using textural, compositional and stratagraphic data fom Magentic Island, Great Barrier Reef, Australia. Marine Geology. 299: 18-32.
Link to full text or pdf

Lewis, SE, Brodie, JE, McCulloch, MT, Mallela, J, Jupiter, SD, Stuart Williams, H, Lough, JM and Matson, EG (2012). An assessment of an environmental gradient using coral geochemical records, Whitsunday Islands, Great Barrier Reef, Australia. Marine Pollution Bulletin. 65: 306-319.
Link to full text or pdf

Lewis, SE, Wust, RaJ, Webster, JM, Shields, GA, Renema, W, Lough, JM and Jacobsen, G (2012). Development of an inshore fringing coral reef using textural, compositional and stratigraphic data from Magnetic Island, Great Barrier Reef, Australia. Marine Geology. 299: 18-32.
Link to full text or pdf

Lin, MF, Kitahara, MV, Tachikawa, H, Fukami, H, Miller, DJ and Chen, CA (2012). Novel organization of the mitochondrial genome in the deep-sea coral, Madrepora oculata (Hexacorallia, Scleractinia, Oculinidae) and its taxonomic implications. Molecular Phylogenetics and Evolution. 65(1): 323-328.
Link to full text or pdf

Lin, M-F, Kitahara, MV, Tachikawa, H, Keshavmurthy, S and Chen, CA (2012). A new shallow-water species, Polycyathus chaishanensis sp nov (Scleractinia: Caryophylliidae), from Chaishan, Kaohsiung, Taiwan. Zoological Studies. 51(2): 213-221.
Link to full text or pdf

Llewellyn, LE, Everingham, YL and Lough, JM (2012). Pharmacokinetic modelling of multi-decadal luminescence time series in coral skeletons. Geochimica et Cosmochimica Acta. 83: 263-271.
Link to full text or pdf

Lonnstedt, OM, McCormick, MI and Chivers, DP (2012). Well-informed foraging: Damage-released chemical cues of injured prey signal quality and size to predators. Oecologia. 168(3): 651-658.
Link to full text or pdf

Lonnstedt, OM, McCormick, MI, Meekan, MG, Ferrari, MCO and Chivers, DP (2012). Learn and live: predator experience and feeding history determines prey behaviour and survival. Proceedings of the Royal Society B-Biological Sciences. 279(1736): 2091-2098.
Link to full text or pdf

Lough, JM (2012). Small change, big difference: Sea surface temperature distributions for tropical coral reef ecosystems, 1950-2011. Journal of Geophysical Research-Oceans. 117: doi:10.1029/2012JC008199.
Link to full text or pdf

Lukoschek, V and Avise, JC (2012). Development of eleven polymorphic microsatellite loci for the sea snake Emydocephalus annulatus (Elapidae: Hydrophiinae) and cross-species amplification for seven species in the sister genus Aipysurus. Conservation Genetics Resources. 4(1): 11-14.
Link to full text or pdf

Lukoschek, V, Scott Keogh, J and Avise, JC (2012). Evaluating fossil calibrations for dating phylogenies in light of rates of molecular evolution: a comparison of three approaches. Systematic Biology. 61(1): 22-43.
Link to full text or pdf

Lukoschek, V and Shine, R (2012). Sea snakes rarely venture far from home. Ecology and Evolution. 2(6): 1113–1121.
Link to full text or pdf

Maddams, J and Mccormick, M (2012). Not all offspring are created equal: Variation in larval characteristics in a serially spawning damselfish. PLOS ONE. 7(11): e48525.
Link to full text or pdf

Madin, E, Ban, NC, Doubleday, Z, Holmes, T, Pecl, G and Smith, F (2012). Socio-economic and management implications of range-shifting species in marine systems. Global Environmental Change. 22(1): 137-146.
Link to full text or pdf

Madin, JS, Hoogenboom, MO and Connolly, SR (2012). Integrating physiological and biomechanical drivers of population growth over environmental gradients on coral reefs. Journal of Experimental Biology. 215(6): 968-976.
Link to full text or pdf

Madin, JS, Hughes, TP and Connolly, SR (2012). Calcification, storm damage and population resilience of tabular corals under climate change. PLOS ONE. 7(10): e46637.
Link to full text or pdf

Malcolm, HA, Foulsham, E, Pressey, RL, Jordan, A, Davies, PL, Ingleton, T, Johnstone, N, Hessey, S and Smith, SDA (2012). Selecting zones in a marine park: Early systematic planning improves cost-efficiency; combining habitat and biotic data improves effectiveness. Ocean & Coastal Management. 59: 1-12.
Link to full text or pdf

Malerba, ME, Connolly, SR and Heimann, K (2012). Nitrate-nitrite dynamics and phytoplankton growth: formulation and experimental evaluation of a dynamic model. Limnology and Oceanography. 57: 1555-1571.
Link to full text or pdf

Manassa, RP and McCormick, MI (2012). Risk assessment via predator diet cues in a coral reef goby. Journal of Experimental Marine Biology and Ecology. 426: 48-52.
Link to full text or pdf

Manassa, RP and McCormick, MI (2012). Social learning and acquired recognition of a predator by a marine fish. Animal Cognition. 15(4): 559-565.
Link to full text or pdf

Manuel, M and Foret, S (2012). Searching for Eve: Basal metazoans and the evolution of multicellular complexity. Bioessays. 34(3): 247-251.
Link to full text or pdf

Marshell, A and Mumby, P (2012). Revisiting the functional roles of the surgeonfish Acanthurus nigrofuscus and Ctenochaetus striatus. Coral Reefs. 31: 1093–1101.
Link to full text or pdf

McClanahan, T, Abunge, C and Cinner, J (2012). Heterogeneity in fishers’ and managers’ preferences towards management restrictions and benefits in Kenya. Environmental Conservation. 39(4): 357-369.
Link to full text or pdf

McClanahan, TR, Donner, SD, Maynard, JA, Macneil, MA, Graham, NA, Maina, J, Baker, AC, Alemu, JBI, Beger, M, Campbell, SJ, Darling, ES, Eakin, CM, Heron, SF, Jupiter, SD, Lundquist, CJ, McLeod, E, Mumby, PJ, Paddack, MJ, Selig, ER and Van Woesik, R (2012). Prioritizing key resilience indicators to support coral reef management in a changing climate. PLOS ONE. 7(8): e42884.
Link to full text or pdf

McCormick, MI (2012). Lethal effects of habitat degradation on fishes through changing competitive advantage. Proceedings of the Royal Society B-Biological Sciences. 279(1744): 3899-3904.
Link to full text or pdf

McCormick, MI and Weaver, CJ (2012). It pays to be pushy: Intracohort interference competition between two reef fishes. PLOS ONE. 7(8): e42590.
Link to full text or pdf

McCulloch, M, Falter, J, Trotter, J and Montagna, P (2012). Coral resilience to ocean acidification and global warming through pH up-regulation. Nature Climate Change. 2: 623-627.
Link to full text or pdf

McCulloch, M, Trotter, J, Montagna, P, Falter, J, Dunbar, R, Freiwald, A, Foersterra, N, Correa, ML, Maier, C, Ruggeberg, A and Taviani, M (2012). Resilience of cold-water scleractinian corals to ocean acidification: Boron isotopic systematics of pH and saturation state up-regulation. Geochimica et Cosmochimica Acta. 87: 21-34.
Link to full text or pdf

McLeod, E, Green, A, Game, E, Anthony, K, Cinner, J, Heron, S, Kleypas, J, Lovelock, C, Pandolfi, J, Pressey, R, Salm, R, Schill, S and Woodroffe, C (2012). Integrating climate and ocean change vulnerability into conservation planning. Coastal Management. 40(6): 357-369.
Link to full text or pdf

McLeod, IM, Parsons, DM, Morrison, MA, Le Port, AS and Taylor, RB (2012). Factors affecting the recovery of soft-sediment mussel reefs in the Firth of Thames, New Zealand. Marine and Freshwater Research. 63(1): 78-83.
Link to full text or pdf

Menard, A, Turgeon, K, Roche, DG, Binning, SA and Kramer, DL (2012). Shelters and their use by fishes on fringing coral reefs. PLOS ONE. 7(6): e38450.
Link to full text or pdf

Messmer, V, Jones, GP, Munday , PL and Planes, S (2012). Concordance between genetic and species diversity in coral reef fishes across the Pacific Ocean biodiversity gradient. Evolution. 66(12): 3902–3917.
Link to full text or pdf

Metais, I, Ekouma, EM, Ngpan, R, Planes, S and Mouneyrac, C (2012). Oxidative stress responses and biological indices in the giant clam Tridacna maxima and the reef fish Epinephelus merra from the French Polynesian Moorea Island. Marine Pollution Bulletin. 64(10): 2233-7.
Link to full text or pdf

Middlebrook, R, Anthony, K, Hoegh-Guldberg, O and Dove, S (2012). Thermal priming affects symbiont photosynthesis but does not alter bleaching susceptibility in Acropora millepora. Journal of Experimental Marine Biology and Ecology. 432-433: 64-72.
Link to full text or pdf

Miller, GM, Watson, S-A, Donelson, JM, Mccormick, MI and Munday, PL (2012). Parental environment mediates impacts of elevated CO2 on a coral reef fish. Nature Climate Change. 2: 858–861.
Link to full text or pdf

Mills, M, Adams, VM, Pressey, RL, Ban, NC and Jupiter, S (2012). Where do national and local conservation actions meet? Simulating the expansion of ad hoc and systematic approaches to conservation into the future in Fiji. Conservation Letters. 5(5): 387-398.
Link to full text or pdf

Mitchell, M, Cowman, P and Mccormick, M (2012). Chemical alarm cues are conserved within the coral reef fish family Pomacentridae. PLOS ONE. 7(10): e47428.
Link to full text or pdf

Mouillot, D, Graham, N, Villéger, S, Mason, N and Bellwood, D (2012). A functional approach reveals community responses to disturbances. Trends in Ecology & Evolution. 5(5): 387-398.
Link to full text or pdf

Mooney, CJ and Kingsford, MJ (2012). Sources and movements of Chironex fleckeri medusae using statolith elemental chemistry. Hydrobiologia. 690(1): 269-277.
Link to full text or pdf

Mourier, J, Vercelloni, J and Planes, S (2012). Evidence of social communities in a spatially structured network of a free-ranging shark species. Animal Behaviour. 83(2): 389-401.
Link to full text or pdf

Moya, A, Huisman, L, Ball, EE, Hayward, DC, Grasso, LC, Chua, CM, Woo, HN, Gattuso, JP, Foret, S and Miller, DJ (2012). Whole transcriptome analysis of the coral Acropora millepora reveals complex responses to CO2-driven acidification during the Initiation of calcification. Molecular Ecology. 21(10): 2440-2454.
Link to full text or pdf

Muhs, DR. Pandolfi, JM. Simmons, KR and Schumann, RR (2012). Sea-level history of past interglacial periods from uranium-series dating of corals, Curacao, Leeward Antilles islands. Quaternary Research. 78(2): 157-169.
Link to full text or pdf

Muller E, Raymundo L, Willis B, Haapkyla J, Yusuf S, et al. (2012). Coral health and disease in the Spermonde Archipelago and Wakatobi, Sulawesi. Journal of Indonesian Coral Reefs 1: 147-159.
Link to full text or pdf

Mumby, PJ. Steneck, RS. Edwards, AJ. Ferrari, R. Coleman, R. Harborne, AR and Gibson, JP (2012). Fishing down a Caribbean food web relaxes trophic cascades. Marine Ecology-Progress Series. 445: 13-24.
Link to full text or pdf

Munday, PL, McCormick, MI, Meekan, M, Dixson, DL, Watson, S-A, Ferrari, MCO and Chivers, D (2012). Selective mortality associated with variation in CO2 tolerance in a marine fish. Ocean Acidification. 1(1): 1-5.
Link to full text or pdf

Munday, PL, Mccormick, MI and Nilsson, GE (2012). Impact of global warming and rising CO2 on coral reef fishes: what hope for the future? Journal of Experimental Biology. 215: 3865-3873.
Link to full text or pdf

Münkemüller, T, De Bello, F, Meynard, CN, Gravel, D, Lavergne, S, Mouillot, D, Mouquet, N and Thuiller, W (2012). From diversity indices to community assembly processes: A test with simulated data. Ecography. 35(5): 468-480.
Link to full text or pdf

Nagelkerken, I, Grol, MGG and Mumby, PJ (2012). Effects of marine reserves versus nursery habitat availability on structure of reef fish communities. PLOS ONE. 7(6): e36906.
Link to full text or pdf

Nash, KL, Graham, NAJ, Januchowski-Hartley, FA and Bellwood, DR (2012). Influence of habitat condition and competition on foraging behaviour of parrotfishes. Marine Ecology-Progress Series. 457: 113-124.
Link to full text or pdf

Nesa, B, Baird, AH, Harii, S, Yakovleva, I and Hidaka, M (2012). Algal symbionts increase DNA damage in coral planulae exposed to sunlight. Zoological Studies. 51(1): 12-17.
Link to full text or pdf

Nilsson, GE, Dixson, DL, Domenici, P, McCormick, MI, Sorensen, C, Watson, S-A and Munday, PL (2012). Near-future carbon dioxide levels alter fish behaviour by interfering with neurotransmitter function. Nature Climate Change. 2(3): 201-204.
Link to full text or pdf

Noonan, SHC, Jones, GP and Pratchett, MS (2012). Coral size, health and structural complexity: effects on the ecology of a coral reef damselfish. Marine Ecology-Progress Series. 456: 127-137.
Link to full text or pdf

Nowicki, JP, Miller, GM and Munday, PL (2012). Interactive effects of elevated temperature and CO2 on foraging behavior of juvenile coral reef fish. Journal of Experimental Marine Biology and Ecology. 412: 46-51.
Link to full text or pdf

Nystrom, M, Norstrom, AV, Blenckner, T, De La Torre-Castro, M, Eklof, JS, Folke, C, Osterblom, H, Steneck, RS, Thyresson, M and Troell, M (2012). Confronting feedbacks of degraded marine ecosystems. Ecosystems. 15(5): 695-710.
Link to full text or pdf

O’Shea, OR, Thums, M, Van Keulen, M and Meekan, M (2012). Bioturbation by stingrays at Ningaloo Reef, Western Australia. Marine and Freshwater Research. 63(3): 189-197.
Link to full text or pdf

Palmer, C, Graham, E and Baird, A (2012). Immunity through early development of coral larvae. Developmental and Comparative Immunology. 38: 395-399.
Link to full text or pdf

Palmer, CV, Bythell, JC and Willis, BL (2012). Enzyme activity demonstrates multiple pathways of innate immunity in Indo-Pacific anthozoans. Proceedings of the Royal Society B-Biological Sciences. 279(1743): 3879-3887.
Link to full text or pdf

Pandolfi, J and Budd, A (2012). A festschrift for Jeremy B.C. Jackson and his integration of paleobiology, ecology, evolution, and conservation biology. Evolutionary Ecology. 26(2): 227-232.
Link to full text or pdf

Pernice, M, Meibom, A, Van Den Heuvel, A, Kopp, C, Domart-Coulon, I, Hoegh-Guldberg, O and Dove, S (2012). A single-cell view of ammonium assimilation in coral-dinoflagellate symbiosis. The ISME Journal. 6: 1314–1324.
Link to full text or pdf

Perry, CT, Edinger, EN, Kench, PS, Murphy, GN, Smithers, SG, Steneck, RS and Mumby, PJ (2012). Estimating rates of biologically driven coral reef framework production and erosion: A new census-based carbonate budget methodology and applications to the reefs of Bonaire. Coral Reefs. 31(3): 853-868.
Link to full text or pdf

Phinn, SR, Roelfsema, CM and Mumby, PJ (2012). Multi-scale, object-based image analysis for mapping geomorphic and ecological zones on coral reefs. International Journal of Remote Sensing. 33(12): 3768-3797.
Link to full text or pdf

Pisapia, C, Hennige, SJ, Haapkylae, J, Matteucci, R and Smith, DJ (2012). Morphological changes in polyp structure of massive coral species in clear and turbid waters. Bulletin of Marine Science. 88(1): 183-191.
Link to full text or pdf

Planes, S, Lecchini, D, Mellin, C, Charton, JG, Harmelin-Vivien, M, Kulbicki, M, Mou-Tham, G and Galzin, R (2012). Environmental determinants of coral reef fish diversity across several French Polynesian atolls. Comptes Rendus Biologies. 335(6): 417-423.
Link to full text or pdf

Pommier, T, Douzery, EJP and Mouillot, D (2012). Environment drives high phylogenetic turnover among oceanic bacterial communities. Biology Letters. 8(4): 562-566.
Link to full text or pdf

Ponce-Reyes, R, Reynoso-Rosales, V-H, Watson, JEM, Vanderwal, J, Fuller, RA, Pressey, RL and Possingham, HP (2012). Vulnerability of cloud forest reserves in Mexico to climate change. Nature Climate Change. 2(6): 448-452.
Link to full text or pdf

Pratchett, MS, Coker, DJ, Jones, GP and Munday, PL (2012). Specialisation in habitat use by coral reef damselfishes and their susceptibility to habitat loss. Ecology and Evolution. 2(9): 2168-2180.
Link to full text or pdf

Puill-Stephan, E, Seneca, FO, Miller, DJ, Van Oppen, MJH and Willis, BL (2012). Expression of putative immune response genes during early ontogeny in the coral Acropora millepora. PLOS ONE. 7(7): e39099.
Link to full text or pdf

Puill-Stephan, E, Van Oppen, MJH, Pichavant-Rafini, K and Willis, BL (2012). High potential for formation and persistence of chimeras following aggregated larval settlement in the broadcast spawning coral, Acropora millepora. Proceedings of the Royal Society B-Biological Sciences. 279(1729): 699-708.
Link to full text or pdf

Puill-Stephan, E, Willis, BL, Abrego, D, Raina, J-B and Van Oppen, MJH (2012). Allorecognition maturation in the broadcast-spawning coral Acropora millepora. Coral Reefs. 31: 1019–1028.
Link to full text or pdf

Purcell, SW, Hair, CA and Mills, DJ (2012). Sea cucumber culture, farming and sea ranching in the tropics: progress, problems and opportunities. Aquaculture. 368-369: 68–81.
Link to full text or pdf

Ramirez-Macias, D, Meekan, M, De La Parra-Venegas, R, Remolina-Suarez, F, Trigo-Mendoza, M and Vazquez-Juarez, R (2012). Patterns in composition, abundance and scarring of whale sharks Rhincodon typus near Holbox Island, Mexico. Journal of Fish Biology. 80(5): 1401-1416.
Link to full text or pdf

Rau, G, McLeod, E and Hoegh-Guldberg, H (2012). The need for new ocean conservation strategies in a high-carbon dioxide world. Nature Climate Change. 2: 720–724
Link to full text or pdf

Redondo-Rodriguez, A, Weeks, SJ, Berkelmans, R, Hoegh-Guldberg, O and Lough, JM (2012). Climate variability of the Great Barrier Reef in relation to the tropical Pacific and El Nino-Southern Oscillation. Marine and Freshwater Research. 63(1): 34-47.
Link to full text or pdf

Reef, R, Pandolfi, JM and Lovelock, CE (2012). The effect of nutrient enrichment on the growth, nucleic acid concentrations, and elemental stoichiometry of coral reef macroalgae. Ecology and Evolution. 2(8): 1985-95.
Link to full text or pdf

Reyes-Bermudez, A, Miller, D and Sprungala, S (2012). The neuronal calcium sensor protein Acrocalcin: a potential target of calmodulin regulation during development in the coral Acropora millepora. PLOS ONE. 7 (12): e51689.
Link to full text or pdf

Richards, Z and Van Oppen, M (2012). Rarity and genetic diversity in Indo-Pacific Acropora corals. Ecology and Evolution. 2(8): 1867-1888.
Link to full text or pdf

Richardson, A, Brown, C, Brander, K, Bruno, J, Buckley, L, Burrows, M, Duarte, C, Halpern, B, Hoegh-Guldberg, O, Holding, J, Kappel, C, Kiessling, W, Moore, P, O’connor, M, Pandolfi, J, Parmesan, C, Schoeman, D, Schwing, F, Sydeman, W and Poloczanska, E (2012). Climate change and marine life. Biology Letters. 8(6): 907-909.
Link to full text or pdf

Rivera-Posada, J, Owens, L, Caballes, CF and Pratchett, MS (2012). The role of protein extracts in the induction of disease in Acanthaster planci. Journal of Experimental Marine Biology and Ecology. 429: 1-6.
Link to full text or pdf

Roff, G and Mumby, PJ (2012) Global disparity in the resilience of coral reefs. Trends in Ecology & Evolution. 27(7): 404-413.
Link to full text or pdf

Rudi, E, Hoey, A, Campbell, S, Fadli, N, Linkie, M and Baird, A (2012). The Coral Triangle Initiative: What are we missing? A case study from Aceh, Indonesia. Oryx. 46(4): 482–485.
Link to full text or pdf

Ruiz-Moreno, D, Willis, BL, Page, CA, Weil, E, Cróquer, A, Vargas-Angel, B, Jordan-Garza, AG, Jordán-Dahlgren, E, Raymundo, L and Harvell, CD (2012). Global coral disease prevalence associated with sea temperature anomalies and local factors. Diseases of Aquatic Organisms. 100: 249–261.
Link to full text or pdf

Saenger, C, Affek, H, Felis, T, Thiagarajan, N, Lough, J and Holcomb, M (2012). Carbonate clumped isotope variability in shallow water corals: temperature dependence and growth-related vital effects. Geochimica et Cosmochimica Acta. 99: 224-242.
Link to full text or pdf

Saenz-Agudelo, P, Jones, GP, Thorrold, SR and Planes, S (2012). Patterns and persistence of larval retention and connectivity in a marine fish metapopulation. Molecular Ecology. 21(19): 4695-4705.
Link to full text or pdf

Schmidt-Roach, S, Miller, K, Woolsey, E, Gerlach, G and Baird, A (2012). Broadcast Spawning by Pocillopora Species on the Great Barrier Reef. PLoS ONE. 7(12): e50847.
Link to full text or pdf

Sequeira, A, Mellin, C, Rowat, D, Meekan, MG and Bradshaw, CJA (2012). Ocean-scale prediction of whale shark distribution. Diversity and Distributions. 18(5): 504-518.
Link to full text or pdf

Setiawan, A, Cinner, JE, Sutton, SG and Mukminin, A (2012). The perceived impact of customary marine resource management on household and community welfare in northern Sumatra, Indonesia. Coastal Management. 40(3): 239-249.
Link to full text or pdf

Sheppard, CRC, Ateweberhan, M, Bowen, BW, Carr, P, Chen, CA, Clubbe, C, Craig, MT, Ebinghaus, R, Eble, J, Fitzsimmons, N, Gaither, MR, Gan, CH, Gollock, M, Guzman, N, Graham, NaJ, Harris, A, Jones, R, Keshavmurthy, S, Koldewey, H, Lundin, CG, Mortimer, JA, Obura, D, Pfeiffer, M, Price, ARG, Purkis, S, Raines, P, Readman, JW, Riegl, B, Rogers, A, Schleyer, M, Seaward, MRD, Sheppard, ALS, Tamelander, J, Turner, JR, Visram, S, Vogler, C, Vogt, S, Wolschke, H, Yang, JMC, Yang, SY and Yesson, C (2012). Reefs and islands of the Chagos Archipelago, Indian Ocean: Why it is the world’s largest no-take marine protected area. Aquatic Conservation-Marine and Freshwater Ecosystems. 22(2): 232-261.
Link to full text or pdf

Shi, J, Fan, E, Huang, Y, Gu, L and Fabinyi, M (2012). Australian aquaculture production and environmental management (in Chinese). Jiangsu Journal of Agricultural Sciences. 40(2): 250-252.
Link to full text or pdf

Speed, C, Meekan, M, Field, I, McMahon, C, Abrantes, K and Bradshaw, C (2012). Trophic ecology of reef sharks determined using stable isotopes and telemetry. Coral Reefs. 31(2): 357-367.
Link to full text or pdf

Speed, CW, Meekan, MG, Field, IC, McMahon, CR and Bradshaw, CJA (2012). Heat-seeking sharks: Support for behavioural thermoregulation in reef sharks. Marine Ecology-Progress Series. 463: 231-244.
Link to full text or pdf

Sprenger, D, Dingemanse, NJ, Dochtermann, NA, Theobald, J and Walker, SPW (2012). Aggressive females become aggressive males in a sex-changing reef fish. Ecology Letters. 15(9): 986-992.
Link to full text or pdf

Stat, M, Baker, AC, Bourne, DG, Correa, AMS, Forsman, Z, Huggett, MJ, Pochon, X, Skillings, D, Toonen, RJ, Van Oppen, MJH and Gates, RD (2012). Molecular delineation of species in the coral holobiont. Advances in Marine Biology. 63: 1-65.
Link to full text or pdf

Stella, JS (2012). Evidence of corallivory by the keyhole limpet Diodora galeata. Coral Reefs. 31(2): 579-579.
Link to full text or pdf

Steneck, RS (2012). Apex predators and trophic cascades in large marine ecosystems: Learning from serendipity. Proceedings of the National Academy of Sciences of the United States of America. 109(21): 7953-7954.
Link to full text or pdf

Sun, D, Blomberg, SP, Cribb, TH, Mccormick, MI and Grutter, AS (2012). The effects of parasites on the early life stages of a damselfish. Coral Reefs. 31: 1065–1075.
Link to full text or pdf

Takahashi, M. McCormick, MI. Munday, PL and Jones, GP (2012). Influence of seasonal and latitudinal temperature variation on early life history traits of a coral reef fish. Marine and Freshwater Research. 63(10): 856-864.
Link to full text or pdf

Templeman, MA and Kingsford, MJ (2012). Variation in soft tissue chemistry among scyphozoan and cubozoan jellyfishes from the Great Barrier Reef, Australia. Hydrobiologia. 690(1): 279-290.
Link to full text or pdf

Thibaut, LM. Connolly, SR and Sweatman, HPA (2012). Diversity and stability of herbivorous fishes on coral reefs. Ecology. 93(4): 891-901.
Link to full text or pdf

Thomas, MC, Dunn, SR, Altvater, J, Dove, SG and Nette, GW (2012). Rapid identification of long-chain polyunsaturated fatty acids in a marine extract by HPLC-MS using data-dependent acquisition. Analytical Chemistry. 84(14): 5976-5983.
Link to full text or pdf

Thomas, M, King, D and Fidelman, P (2012). Climate change adaptation in coastal cities: insights from the Great Barrier Reef, Australia. International Journal of Climate Change: impacts and responses 3(2): 107-127.
Link to full text or pdf

Ticzon, V, Mumby, P, Samaniego, B, Bejarano-Chavarro, S and David, L (2012). Microhabitat use of juvenile coral reef fish in Palau. Environmental Biology of Fishes. 95(3): 355-370.
Link to full text or pdf

Tillett, BJ, Field, IC, Bradshaw, CJA, Johnson, G, Buckworth, RC, Meekan, MG and Ovenden, JR (2012). Accuracy of species identification by fisheries observers in a north Australian shark fishery. Fisheries Research. 127: 109-115.
Link to full text or pdf

Tillett, BJ. Meekan, MG. Broderick, D, Field, IC, Cliff, G and Ovenden, JR (2012). Pleistocene isolation, secondary introgression and restricted contemporary gene flow in the pig-eye shark, Carcharhinus amboinensis across northern Australia. Conservation Genetics. 13(1): 99-115.
Link to full text or pdf

Tillett, J, Meekan, MG, Field, IC, Thorburn, DC and Ovenden, JR (2012). Evidence for reproductive philopatry in the bull shark Carcharhinus leucas. Journal of Fish Biology. 80(6): 2140-2158.
Link to full text or pdf

Timm, J, Planes, S and Kochzius, M (2012). High similarity of genetic population structure in the false clown anemonefish (Amphiprion ocellaris) found in microsatellite and mitochondrial control region analysis. Conservation Genetics. 13(3): 693-706.
Link to full text or pdf

Van De Water, JaJM, Van Oppen, MJH and Willis, BL (2012). Absence of skeleton deposition in juveniles of the scleractinian coral Acropora millepora. Coral Reefs. 31: 1111.
Link to full text or pdf

Van Der Meer, M, Hobbs, J, Jones, G and Van Herwerden, L (2012). Genetic connectivity among and self-replenishment within island populations of a restricted range subtropical reef fish. PLOS ONE. 7(11): e49660.
Link to full text or pdf

Van Der Meer, MH, Gardner, MG, Hobbs, J-PA, Jones, GP and Van Herwerden, L (2012). Identification of seventeen microsatellite markers for conservation genetic studies of the endemic anemonefish, Amphiprion mccullochi. Conservation Genetics Resources. 4(2): 247-250.
Link to full text or pdf

Van Der Meer, MH, Gardner, MG, Hobbs, J-PA, Pratchett, M and Van Herwerden, L (2012). Identification of twenty one microsatellite loci for conservation genetic studies of the endemic butterflyfish Chaetodon tricinctus. Conservation Genetics Resources. 4(2): 243-246.
Link to full text or pdf

Van Der Meer, MH, Jones, GP, Hobbs, JPA and Van Herwerden, L (2012). Historic hybridization and introgression between two iconic Australian anemonefish and contemporary patterns of population connectivity. Ecology and Evolution. 2(7): 1592-604.
Link to full text or pdf

Van Wynsberge, S, Andréfouët, S, Hamel, MA and Kulbicki, M (2012). Habitats as surrogates of taxonomic and functional fish assemblages in coral reef ecosystems: a critical analysis of factors driving effectiveness. PLOS ONE. 7(7): e40997.
Link to full text or pdf

Vergés, A, Bennett, S and Bellwood, D (2012). Diversity among macroalgae-consuming fishes on coral reefs: a transcontinental comparison. PLOS ONE. 7(9): e45543.
Link to full text or pdf

Vianna, GMS, Meekan, MG, Pannell, DJ, Marsh, SP and Meeuwig, JJ (2012). Socio-economic value and community benefits from shark-diving tourism in Palau: A sustainable use of reef shark populations. Biological Conservation. 145(1): 267-277.
Link to full text or pdf

Villeger, S, Ferraton, F, Mouillot, D and De Wit, R (2012). Nutrient recycling by coastal macrofauna: intra- versus interspecific differences. Marine Ecology-Progress Series. 452: 297-303.
Link to full text or pdf

Villeger, S, Miranda, JR, Hernandez, DF and Mouillot, D (2012). Low functional beta-diversity despite high taxonomic beta-diversity among tropical estuarine fish communities. PLOS ONE. 7(7): e40679.
Link to full text or pdf

Wamukota, AW, Cinner, JE and McClanahan, TR (2012). Co-management of coral reef fisheries: A critical evaluation of the literature. Marine Policy. 36(2): 481-488.
Link to full text or pdf

Wei, NV, Hsieh, HJ, Dai, C-F, Wallace, CC, Baird, AH and Chen, CA (2012). Reproductive isolation among Acropora species (Scleractinia: Acroporidae) in a marginal coral assemblage. Zoological Studies. 51(1): 85-92.
Link to full text or pdf

Welsh, J and Bellwood, D (2012). Spatial ecology of the steephead parrotfish (Chlorurus microrhinos): an evaluation using acoustic telemetry. Coral Reefs. 31(1): 55-65.
Link to full text or pdf

Welsh, JQ and Bellwood, DR (2012). How far do schools of roving herbivores rove? A case study using Scarus rivulatus. Coral Reefs. 31: 991–1003.
Link to full text or pdf

Welsh, JQ and Bellwood, DR (2012). Regional endothermy in a coral reef fish? PLOS ONE. 7(3): e33187.
Link to full text or pdf

Wen, C, Almany, G, Williamson, D, Pratchett, M and Jones, G (2012). Evaluating the effects of marine reserve status on diet, prey availability and prey selection by juvenile predatory fishes. Marine Ecology Progress Series. 469: 133–144.
Link to full text or pdf

Wenger, AS, Johansen, JL and Jones, GP (2012). Increasing suspended sediment reduces foraging, growth and condition of a planktivorous damselfish. Journal of Experimental Marine Biology and Ecology. 428: 43-48.
Link to full text or pdf

Wilson, S, Graham, N, Fisher, R, Robinson, J, Nash, K, Chong-Seng, K, Polunin, N, Aumeeruddy, R and Quatre, R (2012). Effect of macroalgae expansion and marine protected areas on coral recovery following a climatic disturbance. Conservation Biology. 26(6): 995-1004.
Link to full text or pdf

Wong, MYL, Fauvelot, C, Planes, S and Buston, PM (2012). Discrete and continuous reproductive tactics in a hermaphroditic society. Animal Behaviour. 84(4): 897-906.
Link to full text or pdf

Woolsey, E, Bainbridge, S, Kingsford, M and Byrne, M (2012). Impacts of cyclone Hamish at One Tree Reef: Integrating environmental and benthic habitat data. Marine Biology. 159(4): 793-803.
Link to full text or pdf

Wyatt, ASJ, Falter, JL, Lowe, RJ, Humphries, S and Waite, AM (2012). Oceanographic forcing of nutrient uptake and release over a fringing coral reef. Limnology and Oceanography. 57(2): 401-419.
Link to full text or pdf

Young, M and Bellwood, D (2012). Fish predation on sea urchins on the Great Barrier Reef. Coral Reefs. 31(3): 731-738.
Link to full text or pdf

Yu, KF, Zhao, JX, Roff, G, Lybolt, M, Feng, YX, Clark, T and Li, S (2012). High-precision U-series ages of transported coral blocks on Heron Reef (southern Great Barrier Reef) and storm activity during the past century. Palaeogeography Palaeoclimatology Palaeoecology. 337: 23-36.
Link to full text or pdf

Zarco-Perello, S, Pratchett, M, and Liao, V (2012). Temperature-growth performance curves for a coral reef fish, Acanthochromis polyacantusGalaxea, Journal of Coral Reef Studies. 14: 1-7.
Link to full text or pdf

Zhang, Z, Falter, J, Lowe, R and Ivey, G (2012). The combined influence of hydrodynamic forcing and calcification on the spatial distribution of alkalinity in a coral reef system. Journal of Geophysical Research-Oceans. 117: CO4034.
Link to full text or pdf


Books and Book Chapters [12]

Fabinyi, M (2012). Fishing for fairness: Poverty, morality and marine resource management in the Philippines. Asia-Pacific Environment Monograph 7, ANU E-Press: Canberra. http://epress.anu.edu.au?p=167001.
Link to full text or pdf

Fuentes, M; Hamann, M and Lukoschek, V (2012). Marine Reptiles, In A Marine Cliimate Change Impacts and Adaptation Report Card for Australia 2012, Poloczanska, ES, Hobday, AJ and Richardson, AJ, Editors. National Climate Change Adaptation Research Facility. 379-400 pp.
Link to full text or pdf

Hoegh-Guldberg, O (2012). Coral reefs, climate change, and mass extinction, saving a million species, in Saving a million species: Extinction risk from climate change. Hannah, L, Editor Island Press: Washington, DC, United States. 389-394 pp.
Link to full text or pdf

Holbrook, N, Brown, J, Davidson, J, Feng, M, Hobday, A, Lough, J, McGregor, S, Power, S and Risbey, J (2012). El Niño-Southern Oscillation, In A Marine Climate Change Impacts and Adaptation Report Card for Australia 2012, Poloczanska, ES, Hobday, AJ and Richardson, AJ, Editors. National Climate Change Adaptation Research Facility. 82-111 pp.
Link to full text or pdf

Howard, WR, Nash, M, Anthony, K, Schmutter, K, Bostock, H, Bromhead, D, Byrne, M, Currie, K, Diaz-Pulido, G, Eggins, S, Michael Ellwood, Eyre, B, Haese, R, Hallegraeff, G, Hill, K, Hurd, C, Law, C, Lenton, A, Matear, R, McNeil, B, McCulloch, M, Müller, MN, Mundy, P, Opdyke, B, Pandolfi, JM, Richards, R, Roberts, D, Russell, BD, Smith, AM, Tilbrook, B, Waite, A and Williamson, J (2012). Ocean acidification, In A Marine Climate Change Impacts and Adaptation Report Card for Australia 2012, Poloczanska, ES, Hobday, AJ and Richardson, AJ, Editors. National Climate Change Adaptation Research Facility. 114-149 pp.
Link to full text or pdf

Leitch, A and Robinson, C (2012). Shifting Sands: Uncertainty and a local community response to sea levels and policy in Australia. Risk and Social Theory in Environmental Management CSIRO Publishing: Collingwood, Vic, Australia. 117-131 pp.

Lough, J, Sen Gupta, A and Hobday, A (2012). Temperature, In A Marine Climate Change Impacts and Adaptation Report Card for Australia 2012, Poloczanska, ES, Hobday, AJ and Richardson, AJ, Editors. National Climate Change Adaptation Research Facility. 1-25 pp.
Link to full text or pdf

Marsh, H, Weiss, K and Grech, A (2012). Dugong, In Queensland’s Threatened Animals, Curtis, L, Dennis, A, McDonald, K, Kyne, P and Debus, S, Editors. CSIRO Publishing: Melbourne, Australia. 410-411 pp.
Link to full text or pdf

McClanahan TR, Cinner J. (2012). Adapting to a Changing Environment: confronting the consequences of climate change. Oxford University Press. New York. 208 pp.
Link to full text or pdf

Munday, PL, Cheal, AJ, Graham, NAJ, Meekan, M, Pratchett, MS, Sheaves, M, Sweatman, H and Wilson, SK (2012). Tropical Coastal Fishes, In A Marine Climate Change Impacts and Adaptation Report Card for Australia 2012, Poloczanska, ES, Hobday, AJ and Richardson, AJ, Editors. National Climate Change Adaptation Research Facility. 281-306 pp.
Link to full text or pdf

Pratchett, M, Bay, L, Coker, D, Cole, A and Lawton, R (2012). Effects of coral bleaching on coral habitats and associated fishes, In Wildlife and climate change: Towards robust conservation strategies for Australian fauna, Lunney, D and Hutchings, P, Editors. Royal Zoological Society New South Wales: Sydney 59-67 pp.
Link to full text or pdf

Salas, E, Ross Salazar, E and Arias, A (2012). Diagnostic of marine protected areas and responsible fishing areas in the Costa Rican Pacific. Fundación MarViva: San José, Costa Rica.


Conference Papers [19]

Anderson, K, Pratchett, M and Baird, A (2012). Summer growth rates of corals at Lord Howe Island, Australia, In 12th International Coral Reef Symposium, Yellowlees, D and Hughes, TP, Editors. James Cook University: Cairns, Australia. 5 pp.
Link to full text or pdf

Baird, AH, Emslie, MJ and Lewis, AR (2012). Extended periods of coral recruitment on the Great Barrier Reef, In 12th International Coral Reef Symposium, Yellowlees, D and Hughes, TP, Editors. James Cook University: Cairns, Australia. 5 pp.
Link to full text or pdf

Cappo, M, Stowar, M, Stieglitz, T, Lawrey, E, Johansson, C and Macneil, A (2012). Measuring and communicating effects of MPAs on deep “shoal” fisheries, In 12th International Coral Reef Symposium, Yellowlees, D and Hughes, TP, Editors. James Cook University: Cairns, Australia. 5 pp.
Link to full text or pdf

Chua, C-M, Schupp, P, Leggat, W and Baird, A (2012). Effects of ocean acidification on metamorphosis: brooding and spawning larvae, In 12th International Coral Reef Symposium, Yellowlees, D and Hughes, TP, Editors. James Cook University: Cairns, Australia. 5 pp.
Link to full text or pdf

Coles, R, Grech, A, Rasheed, M and McKenzie, L (2012). Evaluating risk to seagrasses in the Tropical Indo-Pacific Region, In 12th International Coral Reef Symposium, Yellowlees, D and Hughes, TP, Editors. James Cook University: Cairns, Australia. 5 pp.
Link to full text or pdf

Devlin, M, Wenger, A, Da Silva, E, Alvarez Romero, JG, Waterhouse, J and McKenzie, L (2012). Extreme weather conditions in the Great Barrier Reef: drivers of change? In 12th International Coral Reef Symposium, Yellowlees, D and Hughes, TP, Editors. James Cook University: Cairns, Australia. 5 pp.
Link to full text or pdf

Doshi, A, Pascoe, S, Thébaud, O, Thomas, CR, Setiasih, N, Hong, JTC, True, J, Schuttenberg, HZ and Heron, SF (2012). Loss of economic value from coral bleaching in S.E. Asia, In 12th International Coral Reef Symposium, Yellowlees, D and Hughes, TP, Editors. James Cook University: Cairns, Australia. 5 pp.
Link to full text or pdf

Heron, S, Pressey, RL, Skirving, WJ, Rauenzahn, JL, Parker, B-aA and Eakin, CM (2012). Identifying oceanic thermal anomalies in the Coral Triangle region, In 12th International Coral Reef Symposium, Yellowlees, D and Hughes, TP, Editors. James Cook University: Cairns, Australia. 5 pp.
Link to full text or pdf

Heron, SF, Maynard, J, Willis, B, Christensen, T, Harvell, CD, Vargas-Angel, B, Beeden, R, Sziklay, J, Aeby, G, Franklin, EC, Skirving, W, Eakin, CM, Burgess, T, Li, J, Liu, G, Lucas, E, Rauenzahn, J and Strong, A (2012). Developments in understanding relationships between environmental conditions and coral disease, In 12th International Coral Reef Symposium, Yellowlees, D and Hughes, TP, Editors. James Cook University: Cairns, Australia. 5 pp.
Link to full text or pdf

McCowan, DM, Pratchett, MS and Baird, AH (2012). Bleaching susceptibility and mortality among corals with differing growth forms, In 12th International Coral Reef Symposium, Yellowlees, D and Hughes, TP, Editors. James Cook University: Cairns, Australia. 6 pp.
Link to full text or pdf

Mills, DJ, Duy, NDQ, Juinio-Menez, MA, Raison, CM and Zarate, JM (2012). Overview of sea cucumber aquaculture and sea-ranching in the South-East Asian region, Hair, C;Pickering, T and Mills, D, Editors. Australian Centre for International Agricultural Research: Canberra. 10 pp.

Paley, AS and Bay, LK (2012). Bleaching condition varies among Acropora millepora color morphs, In 12th International Coral Reef Symposium, Yellowlees, D and Hughes, TP, Editors. James Cook University: Cairns, Australia. 5 pp.
Link to full text or pdf

Pisapia, C, Cole, AJ and Pratchett, MS (2012). Changing feeding preferences of butterflyfishes following coral bleaching, In 12th International Coral Reef Symposium, Yellowlees, D and Hughes, TP, Editors. James Cook University: Cairns, Australia. 5 pp.
Link to full text or pdf

Pratchett, M, Hoey, A, Coker, D and Gardiner, N (2012). Interdependence between reef fishes and scleractinian corals, In 12th International Coral Reef Symposium, Yellowlees, D and Hughes, TP, Editors. James Cook University: Cairns, Australia. 5 pp.
Link to full text or pdf

Reymond, C, Uthicke, S and Pandolfi, JM (2012). Tropical Foraminifera as indicators of water quality and temperature, In 12th International Coral Reef Symposium, Yellowlees, D and Hughes, TP, Editors. James Cook University: Cairns, Australia. 5 pp.
Link to full text or pdf

Rocker, MM, Willis, BL and Bay, LK (2012). Thermal stress-related gene expression in corals with different Symbiodinium types, In 12th International Coral Reef Symposium, Yellowlees, D and Hughes, TP, Editors. James Cook University: Cairns, Australia. 5 pp.
Link to full text or pdf

Tan, JCH, Pratchett, MS, Bay, LK and Baird, AH (2012). Massive coral mortality following a large flood event, In 12th International Coral Reef Symposium, Yellowlees, D and Hughes, TP, Editors. James Cook University: Cairns, Australia. 4 pp.
Link to full text or pdf

Wia, J, Januchowski-Hartley, F, Lahari, RU, Morove, T, Perks, HM and Holmes, KE (2012). Coral farming as means of sustaining livelihoods and promoting resource management, In 12th International Coral Reef Symposium, Yellowlees, D and Hughes, TP, Editors. James Cook University: Cairns, Australia. 5 pp.
Link to full text or pdf

Woolsey, E (2012). Self-fertilization suppresses thermal tolerance in embryos of reef-building coral, In 12th International Coral Reef Symposium, Yellowlees, D and Hughes, TP, Editors. James Cook University: Cairns, Australia. 4 pp.
Link to full text or pdf


Conference Proceedings [2]

Hair, CA, Pickering, TD and Mills, DJ (2012). Asia–Pacific tropical sea cucumber aquaculture. Proceedings of an international symposium held in Noumea, New Caledonia, 15–17 February 2011. ACIAR Proceedings No. 136. Noumea, New Caledonia: Australian Centre for International Agricultural Research, Canberra, 209 pp.
Link to full text or pdf

Yellowlees, D and Hughes, TP (2012). Proceedings of the 12th International Coral Reef Symposium. in 12th International Coral Reef Symposium. Cairns, Australia: James Cook University. http://www.icrs2012.com/Proceedings.htm.
Link to full text or pdf


Reports [15]

Bridge, T and Guinotte, J (2012). Mesophotic coral reef ecosystems in the Great Barrier Reef World Heritage Area: their potential distribution and possible role as refugia from disturbance. Great Barrier Reef Marine Park Authority, Townsville, 51 pp.
Link to full text or pdf

Cinner, J (2012). The effectiveness of community based organizations for managing coastal resources in the Western Indian Ocean. Report to the Western Indian Ocean Marine Science Association, 159 pp.

Craigie, I (2012). Resourcing the aichi biodiversity targets: a first assessment of the resources required for implementing the strategic plan for biodiversity 2011-2020. Hyderabad, India, 83 pp.
Link to full text of pdf

Fernandes, L, Green, A, Tanzer, J, White, A, Aliño, P, M, Jompa, J, Lokani, P, Soemodinoto, A, Knight, M, Pomeroy, B, Possingham, H and Pressey, B (2012). Biophysical principles for designing resilient networks of marine protected areas to integrate fisheries, biodiversity and climate change objectives in the Coral Triangle. Coral Triangle Support Partnership, Jakarta, 152 pp.

Fuentes, M and Marsh, H (2012). Informing dugong hunting management in Torres Strait by studying dugong movements and habitat usage. Final Report to the Australian Marine Mammal Centre, 34 pp.

Graham, N and Huchery, C (2012). The effects of recreational fishing at Diego Garcia on reef fish assemblages. Report for the British Indian Ocean Territory Administration, 14 pp.
Link to full text or pdf

Hughes, T (2012). Review of Draft Regional State of the Coral Triangle Report. Report to the Department of Sustainability, Environment, Water, Population and Communities, 18 pp.

Mills, DJ, Mutimukuru-Maravanyika, T, Ameyaw Asiedu, G and Asare, C (2012). Ghana Coastal Fisheries governance dialogue: Presentations, discussions and outcomes from a stakeholder forum on issues for reforming governance of Ghana’s coastal fisheries. WorldFish and University of Rhode Island, Ghana, 51 pp.

Paley, A, Abrego, D, Haapkyla, J and Willis, B (2012). Coral disease outbreak monitoring program – Implications for management. Report for Great Barrier Reef Marine Park Authority, 55 pp.

Pratchett M, Rivera-Posada J, Aguilar C, Caballe C,and Granda A (2012). Efficacy of oxbile for controlling outbreak populations of Acanthaster planci on the Great Barrier Reef. Report to the Department of Sustainability, Environment, Water, Population & Communities, NERP, Tropical Environmental Hub, 12 pp.
Link to full text or pdf

Ratner, BD, Barman, B, Cohen, P, Mam, K, Nagoli, J and Allison, EH (2012). Strengthening governance across scales in aquatic agricultural systems. Working Paper. The WorldFish Center, Penang, 18 pp.
Link to full text or pdf

Rivera-Posada J and Pratchett MS (2012). Pathogenesis in crown-of-thorns starfish (Acanthaster planci L); Importance in outbreak dynamics and opportunities for controlling populations. Report to the Department of Sustainability, Environment, Water, Population & Communities, NERP, Tropical Environmental Hub, Townsville, 17 pp.
Link to full text or pdf

Rivera-Posada, J and Pratchett, M (2012). A review of existing control efforts for A. planci; limitations to success. Report to the Department of Sustainability, Environment, Water, Population & Communities – National Environmental Research Program – Tropical Ecosystems Hub, Townsville, 26 pp.
Link to full text or pdf

Sheppard C, Carr P, Graham N, Harris A, Head C, Koldewey H, Meeuwig J, Mortimer J, Purkis S, Price A, Roberts C, Schleyer Mh, Sheppard A, Tamelander J and Turner J (2012). Conservation and management in British Indian Ocean Territory (Chagos Archipelago). British Foreign and Commonwealth Office.
Link to full text or pdf

Sobtzick, S, Hagihara, R, Grech, A and Marsh, H (2012). Aerial survey of the urban coast of Queensland to evaluate the response of the dugong population to the widespread effects of the extreme weather events of the summer of 2010-11. Final Report to the Australian Marine Mammal Centre and the National Environment Research Facility, Hobart Australia, 63 pp.
Link to full text of pdf


Popular Books [1]

Fuentes, M (2012). Dhyum the dugong, Reef & Rainforest Research Centre Limited, Cairns, Australia, 32 pp.
Link to full text or pdf


Popular Articles [1]

Klein, C and Ferrari, R (2012). Conflicting sustainable seafood guides confuse consumers, The Conversation. http://theconversation.edu.au/conflicting-sustainable-seafood-guides-confuse-consumers-9867.
Link to full text or pdf

Comments are closed.